Hi all,
I have found many diffs running the tests of sander with
Amber 6 (SGI 6.5.8). Most of them arise from very different
dihedral energies. For example, in the dhfr dir:
< NSTEP = 1 TIME(PS) = 510.051 TEMP(K) = 302.02 PRESS =
0.00
< Etot = -57716.6180 EKtot = 14145.7441 EPtot =
-71862.3622
< BOND = 452.1690 ANGLE = 1277.0334 DIHED =
968.3542
---
> NSTEP = 1 TIME(PS) = 510.051 TEMP(K) = 302.03 PRESS =
0.00
> Etot = -53336.9879 EKtot = 14146.1709 EPtot =
-67483.1589
> BOND = 452.1690 ANGLE = 1277.0334 DIHED =
5347.5575
I don't know if this is a known thing (couldn't find it on the
amber web), but would be willing to understand why.
Thanks
Giulio Rastelli
Dipartimento di Scienze Farmaceutiche
Universita di Modena e Reggio Emilia
Via Campi 183
41100 Modena - ITALY
-------------------------------------
tel 0039-059-2055145
fax 0039-059-2055131
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Received on Fri Oct 20 2000 - 01:29:03 PDT