From: Bill Ross <ross_at_cgl.ucsf.edu>
Date: Mon 30 Oct 2000 13:09:40 -0800 (PST)

        I would like to use the POL3 water polarizable potential
        with Amber5. How can I build a box with POL3 water
        molecules using leap ?
        Which file contains the parameters for POL3 molecules ?

I hear that POL3 uses a rigid water model, so the parameters
for the provided TIP3 water can simply be modified by loading
a frcmod file redefining whatever is needed for the water atom
types, OW and HW. One would load the frcmod file after the default
parm.dat file:

> fmod = loadamberparams POL3.frcmod

Bill Ross
Received on Mon Oct 30 2000 - 13:09:40 PST
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