Amber Archive Dec 2002 By Thread
- RE: solvateOct Kristina Furse (Sun Dec 01 2002 - 13:57:13 PST)
- Re: solvateOct David A. Case (Mon Dec 02 2002 - 07:40:02 PST)
- err in specifying disulphide bridge using xleap! A.Madhumalar (Mon Dec 02 2002 - 08:25:30 PST)
- LEAP - Introducing dummy atoms Miguel de Federico (Mon Dec 02 2002 - 08:42:49 PST)
- Re: LEAP - Introducing dummy atoms James W. Caldwell (Mon Dec 02 2002 - 11:11:27 PST)
- Biphasic box (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:13:10 PST)
- test mail Jim Caldwell (Tue Dec 03 2002 - 14:48:07 PST)
- freeware for RNA modeling on Linux (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:57:10 PST)
- Re: freeware for RNA modeling on Linux (fwd) David A. Case (Tue Dec 03 2002 - 15:11:48 PST)
- Re: freeware for RNA modeling on Linux (fwd) Joerg-Gerald Siebers (Mon Dec 16 2002 - 18:43:05 PST)
- Re: freeware for RNA modeling on Linux (fwd) James W. Caldwell (Tue Dec 17 2002 - 11:09:37 PST)
- Chains, LEaP and ambpdb Luis Gracia (Tue Dec 17 2002 - 11:47:59 PST)
- Re: Chains, LEaP and ambpdb Ioana Cozmuta (Tue Dec 17 2002 - 13:07:24 PST)
- Re: Chains, LEaP and ambpdb David A. Case (Tue Dec 17 2002 - 13:09:48 PST)
- Re: Chains, LEaP and ambpdb Luis Gracia (Tue Dec 17 2002 - 13:23:55 PST)
- Re: Chains, LEaP and ambpdb David A. Case (Tue Dec 17 2002 - 19:28:21 PST)
- Studying in Australia John Pritchard (Tue Dec 17 2002 - 22:36:07 PST)
- amber trajectory Ioana Cozmuta (Tue Dec 17 2002 - 21:16:14 PST)
- SUMMARY: solvating a protein with large cavity Tom Bishop (Wed Dec 18 2002 - 07:03:27 PST)
- Re: SUMMARY: solvating a protein with large cavity Richard Henchman (Wed Dec 18 2002 - 11:56:20 PST)
- roar-cp problems M. L. Dodson (Wed Dec 18 2002 - 13:00:37 PST)
- Re: SUMMARY: solvating a protein with large cavity Ioana Cozmuta (Wed Dec 18 2002 - 17:21:23 PST)
- MPI_BCAST error Nathan A. Baker (Wed Dec 18 2002 - 07:51:02 PST)
- Re: MPI_BCAST error Scott Brozell (Wed Dec 18 2002 - 13:24:55 PST)
- Re: MPI_BCAST error Nathan A. Baker (Wed Dec 18 2002 - 17:31:47 PST)
- water/nonTIP3P Ioana Cozmuta (Wed Dec 18 2002 - 17:33:23 PST)
- Re: water/nonTIP3P Ioana Cozmuta (Wed Dec 18 2002 - 18:17:24 PST)
- ntwv saves v(t) or v(t+dt/2) ? hagop demirdjian (Thu Dec 19 2002 - 08:04:55 PST)
- Re: ntwv saves v(t) or v(t+dt/2) ? David A. Case (Thu Dec 19 2002 - 09:24:33 PST)
- antechamber Carsten Detering (Wed Dec 18 2002 - 14:32:44 PST)
- message during minimization Ioana Cozmuta (Tue Dec 17 2002 - 21:31:52 PST)
- Re: message during minimization darden (Wed Dec 18 2002 - 08:24:48 PST)
- Re: message during minimization Ioana Cozmuta (Wed Dec 18 2002 - 15:09:05 PST)
- Re: message during minimization darden (Wed Dec 18 2002 - 16:32:21 PST)
- Re: message during minimization Ioana Cozmuta (Wed Dec 18 2002 - 18:02:26 PST)
- Re: message during minimization David A. Case (Thu Dec 19 2002 - 08:05:00 PST)
- chirality.c failure - diagnosis, but no cure... Michael Ford (Thu Dec 19 2002 - 10:07:07 PST)
- Re: chirality.c failure - diagnosis, but no cure... Michael Ford (Thu Dec 19 2002 - 15:25:21 PST)
- selection of residues Ioana Cozmuta (Fri Dec 20 2002 - 16:51:52 PST)
- cap option Ioana Cozmuta (Sun Dec 22 2002 - 17:21:01 PST)
- beginners question dynamic group (Sun Dec 22 2002 - 21:17:52 PST)
- targeted MD sample eric hu (Thu Dec 26 2002 - 12:25:36 PST)
- Molecular dynamic protocol... Andrei Leitão (Fri Dec 27 2002 - 10:40:26 PST)
- Re: Molecular dynamic protocol... David A. Case (Fri Dec 27 2002 - 11:25:51 PST)
- cannot deal with large trajectory? yuann (Sat Dec 28 2002 - 19:17:23 PST)
- Re: cannot deal with large trajectory? yuann (Mon Dec 30 2002 - 18:55:41 PST)
- Trajectory file converted in pdb file Yongjun Jiang (Sun Dec 29 2002 - 17:13:38 PST)
- Sander rfree error kxg2248_at_njit.edu (Mon Dec 30 2002 - 14:58:19 PST)
- Re: Sander rfree error James Caldwell (Mon Dec 30 2002 - 16:36:45 PST)
- sander (CAP) chokes on efc (Itanium2/Linux) Tadashi Takemori (Mon Dec 16 2002 - 23:11:14 PST)
- RE: sander (CAP) chokes on efc (Itanium2/Linux) Karen Haskell (Tue Dec 17 2002 - 14:05:31 PST)
- Re: sander (CAP) chokes on efc (Itanium2/Linux) Tadashi Takemori (Wed Dec 18 2002 - 01:38:25 PST)
- water box, Ioana Cozmuta (Tue Dec 17 2002 - 15:18:31 PST)
- Re: water box, Carlos Simmerling (Wed Dec 18 2002 - 05:18:18 PST)
- Re: water box, darden (Wed Dec 18 2002 - 08:33:07 PST)
- Re: water box, Ioana Cozmuta (Wed Dec 18 2002 - 15:37:41 PST)
- Re: water box, David A. Case (Wed Dec 18 2002 - 16:17:31 PST)
- Re: water box, darden (Wed Dec 18 2002 - 16:45:55 PST)
- off-to-mol2 Anke Eisenmann (Wed Dec 18 2002 - 08:49:22 PST)
- Re: off-to-mol2 David A. Case (Wed Dec 18 2002 - 10:03:48 PST)
- About heating... Andrei Leitão (Wed Dec 18 2002 - 10:23:43 PST)
- Re: About heating... David A. Case (Wed Dec 18 2002 - 11:42:51 PST)
- antechamber Carsten Detering (Wed Dec 18 2002 - 11:38:16 PST)
- mm_pbsa error message! William Wei (Wed Dec 18 2002 - 09:17:16 PST)
- Re: mm_pbsa error message! Michael Ford (Wed Dec 18 2002 - 09:37:57 PST)
- solvatebox Luis Gracia (Tue Dec 17 2002 - 16:52:07 PST)
- Re: solvatebox Luis Gracia (Wed Dec 18 2002 - 07:58:47 PST)
- RST file for nonstandard residue vannajan_at_chiangmai.ac.th (Tue Dec 17 2002 - 01:07:04 PST)
- GIBBS - Routine TORCON (internal constraints) failed Miguel de Federico (Tue Dec 17 2002 - 07:29:04 PST)
- carnal amber 7.0 Vlad Cojocaru (Mon Dec 02 2002 - 00:35:34 PST)
- combinig two trajectory files. Yongjun Jiang (Mon Dec 02 2002 - 04:18:29 PST)
- Re: CCL:freeware for RNA modeling on Linux (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:57:21 PST)
- Constraints in Amber (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:57:30 PST)
- gB vs. explicit (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:57:53 PST)
- Amber Trajectories + VMD (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:58:00 PST)
- Energy decomposition with ANAL (fwd) amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 14:58:05 PST)
- Reflector problems amber_at_heimdal.compchem.ucsf.edu (Tue Dec 03 2002 - 15:05:02 PST)
- Re: corrupted trajectory Shixiang Yan (Tue Dec 03 2002 - 15:36:37 PST)
- increasing the number of processors Ioana Cozmuta (Tue Dec 03 2002 - 16:17:58 PST)
- increasing the number of processors (fwd) Ioana Cozmuta (Tue Dec 03 2002 - 16:19:24 PST)
- Re: corrupted trajectory CUI, Guanglei (Tue Dec 03 2002 - 18:04:13 PST)
- bug fixes Filip Lankas (Thu Dec 05 2002 - 06:48:00 PST)
- not compiled with -DHAS_10_12!! William Wei (Thu Dec 05 2002 - 08:29:22 PST)
- Re: Energy decomposition with ANAL Numan Oezguen (Fri Dec 06 2002 - 09:08:20 PST)
- Re: FEP/Gibbs question Lepsa (Tue Dec 10 2002 - 07:59:39 PST)
- Fw: Charges derivation question! Lepsa (Wed Dec 11 2002 - 08:21:23 PST)
- Re: CCL:Amber7 and partial charges David Case (Wed Dec 11 2002 - 10:07:10 PST)
- MM-PBSA: .crg file for Delphi Thomas Steinbrecher (Wed Dec 11 2002 - 10:08:40 PST)
- disulfide bond link between two chains pu xuemei (Mon Dec 16 2002 - 04:50:35 PST)
- Fw: Valine to alanine Gibbs tutorial Lepsa (Mon Dec 16 2002 - 05:20:26 PST)
- Re: Resp Multiconformational charge fitting! Pascal Bonnet (Wed Dec 18 2002 - 02:21:46 PST)
- atomicfluct in ptraj Kristina Furse (Wed Dec 18 2002 - 15:16:29 PST)
- new on the Amber web pages... David A. Case (Tue Dec 31 2002 - 13:51:31 PST)
- Last message date: Tue Dec 31 2002 - 13:51:31 PST
- Archived on: Mon Mar 15 2010 - 05:58:01 PDT
