---------- Forwarded message ----------
Date: Tue, 03 Dec 2002 13:49:12 -0500
From: Peter Gannett <pgannett_at_hsc.wvu.edu>
To: amber_at_heimdal.compchem.ucsf.edu,
Vlad.Cojocaru_at_mpi-bpc.mpg.de
Subject: Re: CCL:freeware for RNA modeling on Linux
Vlad:
I'm not sure what you mean...
If you mean building the RNA you might look at McSym (
http://www.scripps.edu/case/casegr-sh-2.2.html ) can also do what you want. Both are free.
If you want to do Molecular Mechanics/Dynamics, then NAMD (
http://www.ks.uiuc.edu/Research/vmd/ ) is a good viewer for the results. Both packages are free.
As an alternative to NAMD, amber (
http://amber.ch.ic.ac.uk ) can do the MM/MD and is very inexpensive for an academic site.
Pete Gannett
>>> Vlad Cojocaru <Vlad.Cojocaru_at_mpi-bpc.mpg.de> 12/03/02 11:41AM >>>
Does anyone know a good freeware (or cheap software --academic use) for
RNA modeling.
I have an RNA stem and I would like to attach a loop to it.
Thanks alot,
vlad
--
Vlad Cojocaru
Max Planck Institute for Biophysical Chemistry
Department: 060
Am Fassberg 11, 37077 Goettingen, Germany
tel: ++49-551-201.1389
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204
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Received on Tue Dec 03 2002 - 14:57:21 PST
