Amber Archive Jul 2001: By Thread

gibbs_restrt Olga Carvalho (Mon Jul 02 2001 - 05:21:00 PDT)
- Re: gibbs_restrt jim caldwell (Mon Jul 02 2001 - 10:02:22 PDT)
  - limit the distance Zhangxd (Mon Jul 02 2001 - 13:13:08 PDT)
  - C DNA MONOMER UNITS A.Madhumalar (Tue Jul 03 2001 - 00:38:11 PDT)
- vdw parameters for:THR-HG1, TYR-HH Omer Katzenelson (Mon Jul 02 2001 - 18:49:27 PDT)
high density spot Guanglei Cui (Mon Jul 02 2001 - 07:49:30 PDT)
Hritz Jozef Hritz (Tue Jul 03 2001 - 04:58:18 PDT)
Re: CCl4 ESP Grid problem with jaguar | 010628a (fwd) jim caldwell (Tue Jul 03 2001 - 12:38:21 PDT)
addles Eoin Galligan (Wed Jul 04 2001 - 06:18:59 PDT)
- RE: addles Guanglei Cui (Wed Jul 04 2001 - 07:11:51 PDT)
- amber5 and 77000 atoms ... A. Ababou (Wed Jul 04 2001 - 08:36:16 PDT)
- Re: addles Carlos Simmerling (Thu Jul 05 2001 - 04:38:25 PDT)
- nucgen Xiaolin Chuang (Thu Jul 05 2001 - 05:06:39 PDT)
- gamess X resp : Conclusions. (fwd) jim caldwell (Thu Jul 05 2001 - 10:17:50 PDT)
  - Structure with coordinates of C-alpha atoms only Jung-Hsing Lin (Thu Jul 05 2001 - 19:23:48 PDT)
RE: CCl4 ESP Grid problem with jaguar | 010628a (fwd) Bayly, Christopher (Wed Jul 04 2001 - 08:50:19 PDT)
(no subject) Michal Otyepka (Wed Jul 04 2001 - 10:20:54 PDT)
amber5 and 77000 atoms ... A. Ababou (Wed Jul 04 2001 - 11:20:38 PDT)
RE: CCl4 ESP Grid problem with jaguar GUILBAUD Philippe 153683 (Thu Jul 05 2001 - 02:09:07 PDT)
Re: amber5/6 Bill Ross (Fri Jul 06 2001 - 13:18:23 PDT)
problem in xleap Monica (Sun Jul 08 2001 - 23:47:48 PDT)
Re: stop COM motions in AMBER 5.0.1 question David Case (Mon Jul 09 2001 - 08:06:21 PDT)
Help with Leap! Dat H. Nguyen (Mon Jul 09 2001 - 17:17:58 PDT)
Re: Help with Leap! Bill Ross (Mon Jul 09 2001 - 17:34:52 PDT)
Creating capped peptides with AMBER John Finke (Tue Jul 10 2001 - 17:41:28 PDT)
problem in xleap Monica (Tue Jul 10 2001 - 20:51:18 PDT)
- Re: problem in xleap schayg_at_puskin-a206.sote.hu (Wed Jul 11 2001 - 15:25:18 PDT)
- Re: problem in xleap schayg_at_puskin-a206.sote.hu (Wed Jul 11 2001 - 15:25:18 PDT)
problem in xleap Monica (Tue Jul 10 2001 - 20:51:18 PDT)
- Re:problem in xleap Harshit Patel (Wed Jul 11 2001 - 08:13:56 PDT)
- Re:problem in xleap Bill Ross (Wed Jul 11 2001 - 09:30:08 PDT)
- Request r ojha (Wed Jul 11 2001 - 11:06:23 PDT)
- Internal Restraints in Sander Problem Manoj Cheriyan (Wed Jul 11 2001 - 15:19:31 PDT)
about ion concentration in protein simulation Shixiang Yan (Wed Jul 11 2001 - 06:48:16 PDT)
Re: Internal Restraints in Sander Problem Bill Ross (Wed Jul 11 2001 - 15:40:55 PDT)
Re: about ion concentration in protein simulation Bill Ross (Wed Jul 11 2001 - 15:49:27 PDT)
Parameters for phosphonate available? Gudrun Schuerer (Thu Jul 12 2001 - 06:27:46 PDT)
histidines normal-modes Jones de Andrade (Thu Jul 12 2001 - 07:04:23 PDT)
ptraj diffusion dkon_at_email.arizona.edu (Thu Jul 12 2001 - 11:32:38 PDT)
- Re: ptraj diffusion Thomas Cheatham (Thu Jul 12 2001 - 12:15:46 PDT)
- addions tianxiao young (Thu Jul 12 2001 - 19:55:38 PDT)
- parm94 eric arnoult (Fri Jul 13 2001 - 05:40:20 PDT)
- ewald bomb in amber 6 Todd J. Minehardt (Fri Jul 13 2001 - 07:21:50 PDT)
  - Re: ewald bomb in amber 6 David Konerding (Fri Jul 13 2001 - 07:28:30 PDT)
    - Re: ewald bomb in amber 6 Thomas Cheatham (Fri Jul 13 2001 - 14:51:42 PDT)
    - Re: ewald bomb in amber 6 David Konerding (Fri Jul 13 2001 - 15:07:41 PDT)
    - ADDING IONS USING EDIT A.Madhumalar (Sat Jul 14 2001 - 10:54:31 PDT)
    - Essential Dynamics Sanjeev B.S. (Sun Jul 15 2001 - 08:48:12 PDT)
    - dipolar couplings Richard Stefl (Mon Jul 16 2001 - 05:30:07 PDT)
    - sander minimization problems with igb=3, ntb =0 Todd J. Minehardt (Mon Jul 16 2001 - 06:28:46 PDT)
    - installing amber6 UMEMOTO, Kimiko (Tue Jul 17 2001 - 01:37:13 PDT)
  - Re: ewald bomb in amber 6 Sanjeev B.S. (Fri Jul 13 2001 - 11:30:38 PDT)
  - Re: ewald bomb in amber 6 Michael Crowley (Fri Jul 13 2001 - 11:38:23 PDT)
Re: installing amber6 Bill Ross (Tue Jul 17 2001 - 11:18:06 PDT)
potentials tianxiao young (Tue Jul 17 2001 - 19:58:28 PDT)
ptraj: principal axes Thomas C. Bishop (Wed Jul 18 2001 - 06:23:30 PDT)
Announcing PyMOL v0.56 (+ Windows Installer) DeLano, Warren (Wed Jul 18 2001 - 12:14:45 PDT)
AMBER box dkon_at_email.arizona.edu (Wed Jul 18 2001 - 16:20:00 PDT)
- Re: AMBER box Carlos Simmerling (Thu Jul 19 2001 - 04:24:35 PDT)
- question Zhangxd (Thu Jul 19 2001 - 07:05:18 PDT)
- Amber installation Miguel Cabrera Fuentes (Fri Jul 20 2001 - 11:47:35 PDT)
  - Amber installation on linux Miguel Cabrera Fuentes (Sat Jul 21 2001 - 16:13:59 PDT)
  - constraining hydrogen bonds A.Madhumalar (Sun Jul 22 2001 - 08:19:02 PDT)
    - RE: constraining hydrogen bonds Guanglei Cui (Sun Jul 22 2001 - 09:02:45 PDT)
- dissociation of protein from DNA in MD Michael Cooney (Sat Jul 21 2001 - 12:50:27 PDT)
  - Re: dissociation of protein from DNA in MD David Case (Sat Jul 21 2001 - 13:15:13 PDT)
equilibriating LES Eoin Galligan (Thu Jul 19 2001 - 03:27:55 PDT)
- Re: equilibriating LES Carlos Simmerling (Thu Jul 19 2001 - 04:22:54 PDT)
parm99 Giulio Rastelli (Thu Jul 19 2001 - 04:01:41 PDT)
Re: constraining hydrogen bonds Bill Ross (Sun Jul 22 2001 - 15:50:24 PDT)
Intprt in PMF calculations Ulf Ryde (Mon Jul 23 2001 - 04:18:57 PDT)
rigid body motion dkon_at_email.arizona.edu (Mon Jul 23 2001 - 10:20:27 PDT)
- Re: rigid body motion Sanjeev B.S. (Wed Jul 25 2001 - 09:00:00 PDT)
Npairs Exceeds Max Anton B. Guliaev (Mon Jul 23 2001 - 10:37:48 PDT)
[charmm-bbs] Post-doctoral position available Chris Chipot (Mon Jul 23 2001 - 16:32:19 PDT)
Post-doctoral position available Chris Chipot (Mon Jul 23 2001 - 16:32:19 PDT)
Question... backy_at_ibms.sinica.edu.tw (Mon Jul 23 2001 - 22:57:56 PDT)
A request regarding AMBER postings with attached files Anita Ilze Zvaigzne (Tue Jul 24 2001 - 03:18:42 PDT)
Windows Virus Markus Drumm (Tue Jul 24 2001 - 03:42:07 PDT)
Re: A request regarding AMBER postings with attached files (fwd) Andrew Gordon Purkiss (Tue Jul 24 2001 - 04:14:29 PDT)
block attachments? Jake Isaacs (Tue Jul 24 2001 - 06:22:46 PDT)
- Re: block attachments? Anita Ilze Zvaigzne (Tue Jul 24 2001 - 08:06:07 PDT)
- trajectory analysis dkon_at_email.arizona.edu (Tue Jul 24 2001 - 11:15:31 PDT)
  - Re: trajectory analysis Andreas Svrcek-Seiler (Tue Jul 24 2001 - 12:00:59 PDT)
  - Re: trajectory analysis Carlos Simmerling (Tue Jul 24 2001 - 12:22:24 PDT)
  - spam jim caldwell (Tue Jul 24 2001 - 14:11:45 PDT)
  - water cap Guanglei Cui (Tue Jul 24 2001 - 21:29:45 PDT)
    - Re: water cap Michael Cooney (Wed Jul 25 2001 - 10:27:54 PDT)
    - DelPhi's manual Xiaolin Chuang (Wed Jul 25 2001 - 10:37:04 PDT)
    - Re: DelPhi's manual Andreas Svrcek-Seiler (Thu Jul 26 2001 - 04:55:11 PDT)
    - ptraj to re-associate protein+DNA Michael Cooney (Wed Jul 25 2001 - 14:34:29 PDT)
    - About Delphi... backy_at_ibms.sinica.edu.tw (Wed Jul 25 2001 - 20:42:10 PDT)
  - Trosion parameters Eric ARNOULT (Wed Jul 25 2001 - 01:34:25 PDT)
hybridization tianxiao young (Tue Jul 24 2001 - 07:10:55 PDT)
Re: trajectory analysis Bill Ross (Tue Jul 24 2001 - 11:48:54 PDT)
Re: Adding ions in xleap Yuguang Mu (Thu Jul 26 2001 - 23:25:38 PDT)
MD run with constantly decreasing total energy (fwd) jim caldwell (Sun Jul 29 2001 - 19:28:36 PDT)
- Re: MD run with constantly decreasing total energy (fwd) Andreas Svrcek-Seiler (Mon Jul 30 2001 - 02:06:55 PDT)
- simulating membranes with AMBER (fwd) jim caldwell (Mon Jul 30 2001 - 08:16:06 PDT)
- beginners problem (fwd) jim caldwell (Mon Jul 30 2001 - 08:16:28 PDT)
- vdW parameters for our friend, vanadium (fwd) jim caldwell (Mon Jul 30 2001 - 11:54:33 PDT)
- problem with xleap and sander! (fwd) jim caldwell (Mon Jul 30 2001 - 11:56:23 PDT)
- is parm98 the same as parm99? (fwd) jim caldwell (Tue Jul 31 2001 - 07:59:54 PDT)
- restarting gibbs (fwd) jim caldwell (Tue Jul 31 2001 - 08:00:25 PDT)
- box information Giulio Rastelli (Tue Jul 31 2001 - 10:39:29 PDT)
Re: simulating membranes with AMBER Thomas Huber (Tue Jul 31 2001 - 11:54:38 PDT)
Problem with Dat H. Nguyen (Tue Jul 31 2001 - 16:22:21 PDT)

Amber Archive Jul 2001 By Thread