ADDING IONS USING EDIT

From: A.Madhumalar <malar_at_mbu.iisc.ernet.in>
Date: Sat 14 Jul 2001 21:54:31 +0400 (RET)

Dear amber users,

               When i tried to add Na+ ions using edit(AMBER5) for a
dodecamer DNA duplex i found that the two ions added were too close(at
1.311A). I want to know whether edit will check VDW contact criteria &
then add ions? Is there anyway to overcome this problem? i will be
thankful,if anybody could give me some suggestions.

madhu
Received on Sat Jul 14 2001 - 10:54:31 PDT