Hello,
I am trying to do essential dynamics study. I am trying to follow
the method used by Amadei, et al. (Proteins 1993 17:412-25). There seems
to be some catch, something that is missing. I could calculate the
relative positional fluctuations and got a similar eigenvalue spectrum.
Now when I tried to find the diaplacement vectors projected onto a
particluar eigen vector, or trying to generate different modes, I go
nowhere. Is there anyone who has done this or where I can get detailed
explanations for the steps involved? We have 'whatif' installed here, but
I prefer doing it for myself (and I couldn't get the code for it).
Thanks very much in advance,
-Sanjeev
Received on Sun Jul 15 2001 - 08:48:12 PDT
