constraining hydrogen bonds

From: A.Madhumalar <malar_at_mbu.iisc.ernet.in>
Date: Sun 22 Jul 2001 19:19:02 +0400 (RET)

Dear amber users,
   I am having a doubt regarding the usage of ntc=2, which will constrain
all bonds involving hydrogen atoms in md input.Is it true that if i
use this it will also constrain initial solute,solvent hydrogen bonds?
Is it that if i want to restrain all WC hydrogen bonds of DNA i should
specify the group seperately ?
Thank u very much for any help.
regrds,
madhu
Received on Sun Jul 22 2001 - 08:19:02 PDT
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