Creating capped peptides with AMBER

From: John Finke <jfinke_at_chem.ucsd.edu>
Date: Tue 10 Jul 2001 17:41:28 -0700 (PDT)

I'm going to be running a simulation of a peptide which is "capped" at
both ends (carboxulated at the N-terminus and amidated at the C terminus).
I don't have a crystal structure for this peptide and am making it from
scratch using Link.

I can make the peptide. What is a good way to put in the capped ends?

John Finke
jfinke_at_ucsd.edu
 
Received on Tue Jul 10 2001 - 17:41:28 PDT
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