Amber Archive Dec 2005 by subject
- AMBER: (no subject)
- AMBER: 6-thioguanine
- AMBER: a quistion about compile
- AMBER: about antechamber(amber8)
- AMBER: about resp
- AMBER: About Salt concentration
- AMBER: Adding/recognizing calcium atoms
- AMBER: Alignment tensor and Interia tensor
- AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble.
- AMBER: AMBER vs QM: base pairing and stacking
- AMBER: ambpdb TER problems
- AMBER: aniso and iso
- AMBER: antechamber problem
- AMBER: Atoms restrain
- AMBER: Build for single precision
- AMBER: building amino acid based surfactants?
- AMBER: Clustering - MMTSB Toolkit kclust
- AMBER: compiling leap with Xeon EM64 (suse linux 9.2)
- AMBER: Creating an Ester with Antechamber/Gaff
- AMBER: distance restraint simulation
- AMBER: distance restraints
- AMBER: does the result of H bond is consistent with the ?Eele of MM_PBSA?
- AMBER: does the result of H bond is consistent with the ∆Eele of MM_PBSA?
- AMBER: E of amber calculations
- AMBER: error about using ambmask
- AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
- AMBER: ERROR in readParm: ...failed to find BONDS_WITHOUT_HYDROGEN
- AMBER: error with compiling amber8 with lam on intel pc clusters
- AMBER: Fluorine in MM-PBSA (AMBER8)
- AMBER: hi
- AMBER: How to add water to calculate MMPBSA
- AMBER: How to add water to calculate MMPBSA. .
- AMBER: increase the limit of restraintmask
- AMBER: Installation of AMBER8 on a PC with a Pentium EE type CPU
- AMBER: installation on a dual core
- AMBER: lib-4324 : UNRECOVERABLE library error
- AMBER: Ligand problem
- AMBER: MD problems (SHAKE)
- AMBER: MD problems/shake
- AMBER: MD problems/shake-many thanks
- AMBER: MD without a thermostat
- AMBER: Merry Xmas
- AMBER: Mg2+ issues of using MM-PB/GBSA
- AMBER: Mg2+ issues of using MM-PB/GBSA. .
- AMBER: MM-PBSA: plot the "Ggas+Gsol" vs time
- AMBER: MM_PBSA parameters
- AMBER: nmode error: GNORM is greater than the requested maximum
- AMBER: No exchange among replicas in REMD!
- AMBER: No skew or curtosis when zero variance in moment
- AMBER: no thermostat versus very weak thermostat
- AMBER: non bond over flow
- AMBER: parallel AMBER on cluster
- AMBER: parameters for fluorine atom
- AMBER: parmchk bug fix
- AMBER: parmchk bug fix, with attachment
- AMBER: Position restraints and Models
- AMBER: Problem in running AMBER 7 in solaris !
- AMBER: problem of calculate the charge
- AMBER: problem of calculate the charge2
- AMBER: problem with improper torsions in parmchk
- AMBER: Problem with sander test suites in solaris !
- AMBER: problem with ssh and xleap
- AMBER: ptraj crash error
- AMBER: question about mmpbsa
- AMBER: Question about partial charge for ligand molecules
- AMBER: Question on makeing up of missing atoms
- AMBER: Questions about MM-PBSA in Amber8
- AMBER: Radial Distribution functions by ptraj
- AMBER: rdc multiple tensors
- AMBER: reading frcmod torsional parameters
- AMBER: regarding ambpdb
- AMBER: Relax in tLEaP ?
- AMBER: Replica-Exchange MD from AMBER8!
- AMBER: Residual Dipolar Refinement
- AMBER: RESP: Question
- AMBER: rmsd
- AMBER: RMSD Calculations
- AMBER: rotational motion in periodic simulation
- AMBER: Sander.LES questions
- AMBER: Some explanations of MM_PBSA .DECOMP OUTPUT file?
- AMBER: some questions about nmode
- AMBER: the averaged structure VS the specific snapshot
- AMBER: The error during calculating PB with pbsa
- AMBER: To post or mail to the list (subscribers only)
- AMBER: Using OPLS atom types
- AMBER: What does a crash mean while running a md simulation?
- AMBER: | ERROR: Could not read coords from *.rst
- AMBER: | ERROR: Could not read coords from rst file
- AMBER:how to deal with metal ion?
- Fwd: AMBER: rdc multiple tensors
- leap compilation problems xeon EM64 processor
- Ligand problem
- Last message date: Wed Jan 04 2006 - 18:17:07 PST
- Archived on: Mon Dec 23 2024 - 05:53:24 PST
