Re: AMBER: RMSD Calculations

From: Carlos Simmerling <>
Date: Mon, 05 Dec 2005 11:00:23 -0500

for ptraj you do indeed need to have the same number of atoms
in the reference structure as you have in the prmtop that you load into
if you can get that resolved then the other issues would be ok.

Kara Di Giorgio wrote:

> I'm also worried that it will only calculate the RMSD if there are an
> identical number of atoms in each, which I don't have.

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Received on Mon Dec 05 2005 - 16:53:00 PST
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