Amber Archive Dec 2005: by author

A D
- Re: AMBER: problem with ssh and xleap (Fri Dec 30 2005 - 19:06:15 PST)
- AMBER: problem with ssh and xleap (Tue Dec 27 2005 - 12:12:51 PST)
Adrian E. Roitberg
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 15:16:22 PST)
Adrian Roitberg
- Re: AMBER: Clustering - MMTSB Toolkit kclust (Wed Dec 07 2005 - 12:46:50 PST)
Angelo Pugliese
- AMBER: Merry Xmas (Thu Dec 22 2005 - 03:43:14 PST)
- AMBER: Atoms restrain (Mon Dec 19 2005 - 05:09:35 PST)
Anthony Cruz
- AMBER: rmsd (Tue Dec 20 2005 - 11:17:51 PST)
Atro Tossavainen
- Re: AMBER: Problem in running AMBER 7 in solaris ! (Fri Dec 02 2005 - 04:14:42 PST)
Barbault Florent
- AMBER: installation on a dual core (Fri Dec 16 2005 - 06:00:08 PST)
Benjamin Juhl
- AMBER: Question on makeing up of missing atoms (Fri Dec 09 2005 - 04:30:57 PST)
Bill Ross
- Re: AMBER: ambpdb TER problems (Mon Dec 26 2005 - 13:27:07 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:54:01 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:50:33 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:14:10 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 12:59:04 PST)
- Re: AMBER: Adding/recognizing calcium atoms (Wed Dec 07 2005 - 13:32:05 PST)
- Re: AMBER: Using OPLS atom types (Sat Dec 03 2005 - 10:15:53 PST)
Bing Liu
- AMBER: Sander.LES questions (Tue Dec 20 2005 - 06:51:09 PST)
blakrose.gazeta.pl
- Re: AMBER: MD problems/shake (Tue Dec 20 2005 - 15:17:45 PST)
- Re: AMBER: MD problems/shake-many thanks (Tue Dec 20 2005 - 15:04:24 PST)
- Re: AMBER: Ligand problem (Mon Dec 19 2005 - 17:02:54 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 16:07:44 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 16:03:08 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:44:59 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:33:12 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 14:45:43 PST)
- AMBER: MD problems/shake (Mon Dec 19 2005 - 12:34:52 PST)
- AMBER: MD problems (SHAKE) (Mon Dec 19 2005 - 04:49:41 PST)
bybaker.itsa.ucsf.edu
- Re: AMBER: antechamber problem (Wed Dec 21 2005 - 21:39:24 PST)
- AMBER: Re: Ligand problem (Tue Dec 20 2005 - 10:50:03 PST)
- AMBER: Ligand problem (Mon Dec 19 2005 - 16:40:22 PST)
Carlos Jaime
- AMBER: RESP: Question (Mon Dec 05 2005 - 09:43:16 PST)
Carlos Simmerling
- Re: AMBER: Sander.LES questions (Tue Dec 20 2005 - 07:07:12 PST)
- Re: AMBER: No exchange among replicas in REMD! (Mon Dec 19 2005 - 08:35:30 PST)
- Re: AMBER: aniso and iso (Mon Dec 19 2005 - 04:26:37 PST)
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 18:23:14 PST)
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 18:22:48 PST)
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 14:27:25 PST)
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 14:26:42 PST)
- Re: AMBER: distance restraints (Sat Dec 17 2005 - 15:08:28 PST)
- Re: AMBER: parallel AMBER on cluster (Thu Dec 15 2005 - 10:55:55 PST)
- Re: AMBER: parameters for fluorine atom (Thu Dec 15 2005 - 04:47:20 PST)
- Re: AMBER: about antechamber(amber8) (Thu Dec 15 2005 - 04:45:59 PST)
- Re: AMBER: E of amber calculations (Thu Dec 15 2005 - 04:30:08 PST)
- Re: AMBER: Question on makeing up of missing atoms (Fri Dec 09 2005 - 04:57:06 PST)
- Re: AMBER: RMSD Calculations (Mon Dec 05 2005 - 08:56:36 PST)
- Re: AMBER: RMSD Calculations (Mon Dec 05 2005 - 08:00:23 PST)
- Re: AMBER: Replica-Exchange MD from AMBER8! (Sat Dec 03 2005 - 13:11:07 PST)
- Re: AMBER: Replica-Exchange MD from AMBER8! (Fri Dec 02 2005 - 14:49:25 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Thu Dec 01 2005 - 11:26:11 PST)
- Re: AMBER: regarding ambpdb (Thu Dec 01 2005 - 05:57:39 PST)
Cenk Andac
- AMBER: Installation of AMBER8 on a PC with a Pentium EE type CPU (Sat Dec 31 2005 - 10:24:30 PST)
cristian obiol
- Re: AMBER: does the result of H bond is consistent with the ?Eele of MM_PBSA? (Fri Dec 23 2005 - 03:01:42 PST)
cui wei
- Re: AMBER: a quistion about compile (Mon Dec 19 2005 - 17:03:46 PST)
- Re: AMBER: a quistion about compile (Mon Dec 19 2005 - 17:00:20 PST)
- AMBER: a quistion about compile (Mon Dec 19 2005 - 04:10:07 PST)
- Re: AMBER: question about mmpbsa (Tue Dec 13 2005 - 17:09:29 PST)
- AMBER: question about mmpbsa (Mon Dec 12 2005 - 23:33:08 PST)
David A. Case
- Re: AMBER: ambpdb TER problems (Fri Dec 30 2005 - 10:05:10 PST)
- Re: AMBER: problem of calculate the charge (Fri Dec 30 2005 - 09:58:47 PST)
- Re: AMBER: ambpdb TER problems (Tue Dec 27 2005 - 12:30:48 PST)
- Re: AMBER: distance restraint simulation (Tue Dec 27 2005 - 12:31:03 PST)
- Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN (Tue Dec 27 2005 - 11:18:06 PST)
- Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN (Tue Dec 27 2005 - 08:17:49 PST)
- Re: AMBER: ambpdb TER problems (Mon Dec 26 2005 - 18:08:26 PST)
- Re: AMBER: building amino acid based surfactants? (Mon Dec 26 2005 - 17:53:19 PST)
- Re: AMBER: ambpdb TER problems (Fri Dec 23 2005 - 17:53:50 PST)
- Re: AMBER: (no subject) (Fri Dec 23 2005 - 17:43:28 PST)
- Re: AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble. (Thu Dec 22 2005 - 11:56:36 PST)
- Re: AMBER: No skew or curtosis when zero variance in moment (Thu Dec 22 2005 - 10:14:25 PST)
- Re: AMBER: a quistion about compile (Wed Dec 21 2005 - 13:01:52 PST)
- Re: AMBER: a quistion about compile (Tue Dec 20 2005 - 08:56:58 PST)
- Re: AMBER: a quistion about compile (Mon Dec 19 2005 - 08:22:58 PST)
- Re: AMBER: Atoms restrain (Mon Dec 19 2005 - 08:20:25 PST)
- Re: AMBER: nmode error: GNORM is greater than the requested maximum (Fri Dec 16 2005 - 14:08:21 PST)
- Re: AMBER: aniso and iso (Thu Dec 15 2005 - 08:28:28 PST)
- Re: AMBER: How to add water to calculate MMPBSA (Wed Dec 14 2005 - 15:50:13 PST)
- Re: AMBER: reading frcmod torsional parameters (Mon Dec 12 2005 - 08:56:02 PST)
- Re: AMBER: Relax in tLEaP ? (Wed Dec 07 2005 - 11:58:43 PST)
- Re: AMBER: hi (Wed Dec 07 2005 - 12:01:52 PST)
- Re: AMBER: Alignment tensor and Interia tensor (Sat Dec 03 2005 - 11:05:30 PST)
- AMBER: parmchk bug fix, with attachment (Fri Dec 02 2005 - 20:33:20 PST)
- AMBER: parmchk bug fix (Fri Dec 02 2005 - 20:22:21 PST)
- Re: AMBER: Creating an Ester with Antechamber/Gaff (Fri Dec 02 2005 - 20:05:16 PST)
- Re: AMBER: Using OPLS atom types (Fri Dec 02 2005 - 20:01:17 PST)
- Re: AMBER: rotational motion in periodic simulation (Fri Dec 02 2005 - 15:06:22 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Thu Dec 01 2005 - 11:47:20 PST)
- Re: AMBER: MD without a thermostat (Thu Dec 01 2005 - 11:42:51 PST)
- Re: AMBER: Residual Dipolar Refinement (Thu Dec 01 2005 - 06:22:11 PST)
David Caliga
- AMBER: Build for single precision (Thu Dec 15 2005 - 07:31:02 PST)
David Cowburn
- RE: AMBER: About Salt concentration (Wed Dec 21 2005 - 13:33:15 PST)
David E. Konerding
- Re: AMBER: ptraj crash error (Fri Dec 02 2005 - 10:24:35 PST)
dmcelh.uchicago.edu
- Fwd: AMBER: rdc multiple tensors (Tue Dec 20 2005 - 09:55:51 PST)
- AMBER: rdc multiple tensors (Mon Dec 19 2005 - 15:01:13 PST)
Don.Bashford.stjude.org
- Re: AMBER: How to add water to calculate MMPBSA. . (Thu Dec 15 2005 - 09:13:30 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA. . (Mon Dec 05 2005 - 10:09:20 PST)
Douali, Latifa
- AMBER: rotational motion in periodic simulation (Fri Dec 02 2005 - 10:50:28 PST)
E.A.Moore
- AMBER: 6-thioguanine (Tue Dec 06 2005 - 06:31:59 PST)
Ed Pate
- AMBER: distance restraint simulation (Tue Dec 27 2005 - 10:36:44 PST)
- AMBER: distance restraints (Sat Dec 17 2005 - 14:43:32 PST)
Eugene Billiot
- AMBER: building amino acid based surfactants? (Mon Dec 26 2005 - 13:25:33 PST)
FyD
- AMBER: Relax in tLEaP ? (Wed Dec 07 2005 - 06:00:38 PST)
- Re: AMBER: RESP: Question (Tue Dec 06 2005 - 05:13:49 PST)
- Re: AMBER: RESP: Question (Mon Dec 05 2005 - 13:31:32 PST)
Germán Sciaini
- AMBER: hi (Wed Dec 07 2005 - 02:51:06 PST)
haixiao jin
- AMBER: the averaged structure VS the specific snapshot (Thu Dec 22 2005 - 20:24:04 PST)
- AMBER: does the result of H bond is consistent with the ∆Eele of MM_PBSA? (Thu Dec 22 2005 - 20:12:46 PST)
HL Eastwood
- AMBER: re: leap compilation problems xeon EM64 processor (Mon Dec 19 2005 - 07:30:57 PST)
- AMBER: compiling leap with Xeon EM64 (suse linux 9.2) (Mon Dec 19 2005 - 07:17:08 PST)
Holger Gohlke
- Re: AMBER: MM-PBSA: plot the "Ggas+Gsol" vs time (Wed Nov 30 2005 - 23:06:49 PST)
Ilyas Yildirim
- Re: AMBER: antechamber problem (Fri Dec 30 2005 - 16:25:38 PST)
- Re: AMBER: Re: Ligand problem (Tue Dec 20 2005 - 16:39:02 PST)
- Re: AMBER: regarding ambpdb (Thu Dec 01 2005 - 02:54:03 PST)
ivan.mmb.pcb.ub.es
- Re: AMBER: reading frcmod torsional parameters (Tue Dec 13 2005 - 07:42:37 PST)
- AMBER: reading frcmod torsional parameters (Mon Dec 12 2005 - 05:44:36 PST)
JAVIER PEREZ
- AMBER: about resp (Wed Dec 07 2005 - 04:12:48 PST)
Jiapu.Zhang.csiro.au
- AMBER: | ERROR: Could not read coords from *.rst (Sat Dec 17 2005 - 15:59:22 PST)
- AMBER: | ERROR: Could not read coords from rst file (Thu Dec 15 2005 - 18:26:46 PST)
Jiri Sponer
- Re: AMBER: About Salt concentration (Fri Dec 16 2005 - 17:05:13 PST)
- AMBER: AMBER vs QM: base pairing and stacking (Wed Dec 07 2005 - 10:22:02 PST)
John O'Mahony
- AMBER: Creating an Ester with Antechamber/Gaff (Thu Dec 01 2005 - 01:46:40 PST)
Junmei Wang
- RE: AMBER: about antechamber(amber8) (Thu Dec 15 2005 - 07:54:40 PST)
Kara Di Giorgio
- AMBER: RMSD Calculations (Mon Dec 05 2005 - 07:22:03 PST)
Kara Wald
- Re: AMBER: RMSD Calculations (Mon Dec 05 2005 - 08:39:44 PST)
Kateryna Miroshnychenko
- AMBER: problem with improper torsions in parmchk (Mon Dec 26 2005 - 08:55:54 PST)
- AMBER: parallel AMBER on cluster (Thu Dec 15 2005 - 10:16:17 PST)
- Re:AMBER: about resp (Wed Dec 07 2005 - 05:50:07 PST)
Kitiyaporn Wittayanarakul
- AMBER: How to add water to calculate MMPBSA (Wed Dec 14 2005 - 10:06:53 PST)
kkirschn.hamilton.edu
- AMBER: Clustering - MMTSB Toolkit kclust (Wed Dec 07 2005 - 10:43:52 PST)
- Re: AMBER: RMSD Calculations (Mon Dec 05 2005 - 08:29:23 PST)
linfu
- AMBER: about antechamber(amber8) (Wed Dec 14 2005 - 23:51:16 PST)
lv haiting
- Re: AMBER: lib-4324 : UNRECOVERABLE library error (Wed Dec 21 2005 - 20:21:50 PST)
- AMBER: lib-4324 : UNRECOVERABLE library error (Wed Dec 21 2005 - 18:31:46 PST)
mingche Pan
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Fri Dec 02 2005 - 11:36:53 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Fri Dec 02 2005 - 10:09:28 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Fri Dec 02 2005 - 08:32:15 PST)
- AMBER: Mg2+ issues of using MM-PB/GBSA (Thu Dec 01 2005 - 11:01:24 PST)
Morena Spreafico
- AMBER: parameters for fluorine atom (Thu Dec 15 2005 - 04:33:52 PST)
Nelson Fonseca
- Re: AMBER: installation on a dual core (Fri Dec 16 2005 - 06:14:22 PST)
- AMBER: MM_PBSA parameters (Tue Dec 06 2005 - 07:26:55 PST)
Nitin Bhardwaj
- AMBER: Adding/recognizing calcium atoms (Wed Dec 07 2005 - 13:24:38 PST)
Peng Tao
- Re: AMBER: No exchange among replicas in REMD! (Mon Dec 19 2005 - 10:35:24 PST)
- Re: AMBER: No exchange among replicas in REMD! (Mon Dec 19 2005 - 06:57:30 PST)
- Re: AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 17:45:03 PST)
- AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 14:11:06 PST)
- AMBER: No exchange among replicas in REMD! (Sun Dec 18 2005 - 14:01:28 PST)
- Re: AMBER: Replica-Exchange MD from AMBER8! (Sat Dec 03 2005 - 12:19:12 PST)
- Re: AMBER: Replica-Exchange MD from AMBER8! (Sat Dec 03 2005 - 09:13:15 PST)
- AMBER: Replica-Exchange MD from AMBER8! (Fri Dec 02 2005 - 14:28:27 PST)
- AMBER: Some explanations of MM_PBSA .DECOMP OUTPUT file? (Thu Dec 01 2005 - 08:35:09 PST)
ping jiang
- Re: AMBER: problem of calculate the charge (Fri Dec 30 2005 - 10:48:41 PST)
- AMBER: problem of calculate the charge2 (Tue Dec 27 2005 - 18:17:05 PST)
- AMBER: problem of calculate the charge (Tue Dec 27 2005 - 16:47:16 PST)
- Re: AMBER: (no subject) (Fri Dec 23 2005 - 18:25:19 PST)
- AMBER: (no subject) (Fri Dec 23 2005 - 12:46:58 PST)
- AMBER: To post or mail to the list (subscribers only) (Fri Dec 23 2005 - 12:07:45 PST)
Piotr Cieplak
- Re: AMBER: RESP: Question (Mon Dec 05 2005 - 10:00:37 PST)
Pradipta Bandyopadhyay
- AMBER: Problem with sander test suites in solaris ! (Fri Dec 02 2005 - 06:26:05 PST)
- AMBER: Problem in running AMBER 7 in solaris ! (Fri Dec 02 2005 - 01:17:19 PST)
Priti Hansia
- Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN (Wed Dec 28 2005 - 05:05:56 PST)
- Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN (Tue Dec 27 2005 - 09:35:41 PST)
- AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN (Fri Dec 23 2005 - 03:28:57 PST)
- AMBER: Radial Distribution functions by ptraj (Thu Dec 01 2005 - 11:44:02 PST)
RadhaKumari Yadav
- AMBER: Alignment tensor and Interia tensor (Sat Dec 03 2005 - 08:58:01 PST)
Ray Luo
- Re: AMBER: question about mmpbsa (Thu Dec 15 2005 - 10:08:55 PST)
- Re: AMBER: question about mmpbsa (Mon Dec 12 2005 - 19:34:13 PST)
- Re: AMBER: The error during calculating PB with pbsa (Sun Dec 04 2005 - 18:16:09 PST)
Rhoad, Jonathan S.
- AMBER: ERROR in readParm: ...failed to find BONDS_WITHOUT_HYDROGEN (Fri Dec 02 2005 - 15:02:36 PST)
Robert Duke
- Re: AMBER: | ERROR: Could not read coords from rst file (Thu Dec 15 2005 - 19:14:35 PST)
- Re: AMBER: parallel AMBER on cluster (Thu Dec 15 2005 - 10:37:22 PST)
- Re: AMBER: Build for single precision (Thu Dec 15 2005 - 08:23:49 PST)
Ross Walker
- RE: AMBER: non bond over flow (Thu Dec 29 2005 - 08:15:35 PST)
- RE: AMBER: parallel AMBER on cluster (Thu Dec 15 2005 - 10:38:57 PST)
- RE: AMBER: Build for single precision (Thu Dec 15 2005 - 08:29:35 PST)
- RE: AMBER: E of amber calculations (Thu Dec 15 2005 - 08:23:46 PST)
- RE: AMBER: error with compiling amber8 with lam on intel pc clusters (Thu Dec 15 2005 - 08:11:05 PST)
- RE: Re[2]: AMBER: What does a crash mean while running a md simulation? (Tue Dec 06 2005 - 08:54:11 PST)
S.Sundar Raman
- AMBER: non bond over flow (Wed Dec 28 2005 - 19:50:27 PST)
- Re: AMBER: regarding ambpdb (Thu Dec 01 2005 - 05:39:31 PST)
- AMBER: regarding ambpdb (Thu Dec 01 2005 - 02:40:58 PST)
Sam
- Re: AMBER: ambpdb TER problems (Wed Dec 28 2005 - 09:17:14 PST)
- Re: AMBER: ambpdb TER problems (Tue Dec 27 2005 - 08:23:39 PST)
- AMBER: ambpdb TER problems (Fri Dec 23 2005 - 08:23:26 PST)
samuel.arey.epfl.ch
- Re: AMBER:how to deal with metal ion? (Fri Dec 30 2005 - 03:05:39 PST)
- Re: AMBER:how to deal with metal ion? (Fri Dec 30 2005 - 02:56:08 PST)
- Re: AMBER: ambpdb TER problems (Mon Dec 26 2005 - 11:26:27 PST)
Scott Brozell
- Re: AMBER: problem with ssh and xleap (Wed Dec 28 2005 - 14:02:48 PST)
Sergey Krishtal
- AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble. (Wed Dec 21 2005 - 22:15:14 PST)
Sichun Yang
- AMBER: increase the limit of restraintmask (Thu Dec 22 2005 - 10:58:14 PST)
Simon Whitehead
- AMBER: ptraj crash error (Fri Dec 02 2005 - 09:51:47 PST)
snowyowls
- AMBER:how to deal with metal ion? (Thu Dec 29 2005 - 22:24:58 PST)
- Re: AMBER: a quistion about compile (Fri Dec 23 2005 - 04:32:52 PST)
- Re: AMBER: a quistion about compile (Wed Dec 21 2005 - 06:53:21 PST)
- Re: AMBER: a quistion about compile (Tue Dec 20 2005 - 05:30:07 PST)
Steve Seibold
- AMBER: Position restraints and Models (Thu Dec 01 2005 - 12:54:06 PST)
Suxin Zheng
- Re: AMBER: Ligand problem (Mon Dec 19 2005 - 17:05:13 PST)
sychen
- Re[2]: AMBER: What does a crash mean while running a md simulation? (Tue Dec 06 2005 - 04:16:49 PST)
- Re: AMBER: Fluorine in MM-PBSA (AMBER8) (Wed Nov 30 2005 - 21:43:55 PST)
Thomas Cheatham
- Re: AMBER: (no subject) (Fri Dec 23 2005 - 13:37:57 PST)
- Re: AMBER: lib-4324 : UNRECOVERABLE library error (Wed Dec 21 2005 - 19:16:22 PST)
- Re: AMBER: How to add water to calculate MMPBSA. . (Thu Dec 15 2005 - 10:09:47 PST)
- Re: AMBER: RMSD Calculations (Mon Dec 05 2005 - 14:50:36 PST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA (Thu Dec 01 2005 - 21:27:21 PST)
Thomas E. Cheatham, III
- Re: AMBER: MD problems/shake (Tue Dec 20 2005 - 11:20:26 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 15:40:40 PST)
- Re: AMBER: MD problems/shake (Mon Dec 19 2005 - 12:53:40 PST)
Tim Meyer
- Re: AMBER:how to deal with metal ion? (Fri Dec 30 2005 - 08:09:07 PST)
- Re: AMBER:how to deal with metal ion? (Fri Dec 30 2005 - 08:05:06 PST)
Varsha Goyal
- Re: AMBER: About Salt concentration (Fri Dec 16 2005 - 17:37:45 PST)
- AMBER: About Salt concentration (Fri Dec 16 2005 - 16:03:05 PST)
Viktor Hornak
- Re: AMBER: error about using ambmask (Thu Dec 08 2005 - 05:53:22 PST)
Vlad Cojocaru
- AMBER: no thermostat versus very weak thermostat (Thu Dec 01 2005 - 07:57:15 PST)
- AMBER: MD without a thermostat (Thu Dec 01 2005 - 07:32:57 PST)
Wei Zhang
- Re: AMBER: a quistion about compile (Tue Dec 20 2005 - 08:35:34 PST)
- Re: AMBER: a quistion about compile (Mon Dec 19 2005 - 09:01:22 PST)
Woojin Lee
- AMBER: Question about partial charge for ligand molecules (Wed Dec 28 2005 - 18:37:47 PST)
Xuebin Qiao
- Re: AMBER: error with compiling amber8 with lam on intel pc clusters (Wed Dec 14 2005 - 23:57:24 PST)
Yam
- Re: AMBER: aniso and iso (Mon Dec 19 2005 - 00:17:43 PST)
- AMBER: aniso and iso (Thu Dec 15 2005 - 02:11:45 PST)
Ye Mei
- AMBER: No skew or curtosis when zero variance in moment (Wed Dec 21 2005 - 07:56:43 PST)
- AMBER: error with compiling amber8 with lam on intel pc clusters (Wed Dec 14 2005 - 19:36:54 PST)
Yong Duan
- RE: AMBER: the averaged structure VS the specific snapshot (Thu Dec 22 2005 - 22:38:00 PST)
- RE: AMBER: does the result of H bond is consistent with the ?Eele of MM_PBSA? (Thu Dec 22 2005 - 22:43:53 PST)
YoungJin Cho
- AMBER: E of amber calculations (Wed Dec 14 2005 - 09:34:47 PST)
yuann.bioinfo.ndhu.edu.tw
- AMBER: Fluorine in MM-PBSA (AMBER8) (Wed Nov 30 2005 - 08:30:36 PST)
zgleo
- AMBER: Questions about MM-PBSA in Amber8 (Thu Dec 01 2005 - 21:04:26 PST)
zhli_2000.126.com
- AMBER: some questions about nmode (Tue Dec 20 2005 - 18:30:22 PST)
- AMBER: nmode error: GNORM is greater than the requested maximum (Wed Dec 14 2005 - 18:16:07 PST)
- AMBER: error about using ambmask (Thu Dec 08 2005 - 05:40:34 PST)
- AMBER: The error during calculating PB with pbsa (Sun Dec 04 2005 - 20:39:19 PST)

Amber Archive Dec 2005 by author