from a fixed template. you might want to use some
other program to add them (auch as one of the
rotamer libraries or SCWRL).
Benjamin Juhl wrote:
> Hi,
>
> lately i am loading pdb files with lea. In these pdb files, some side
> chains are missing (only the 4 backbone atoms are in the file). Leap
> is completeing the missing atoms, but i couldn't find any information
> in the manual in what way those atoms are added exactly. Is a
> energeticaly beneficial conformation chosen or are the atoms simply
> added from a fixed template?
>
> Benjamin
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Fri Dec 09 2005 - 13:53:00 PST
