Amber Archive Dec 2005 by thread
230 messages
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Starting
Wed Nov 30 2005 - 17:53:00 PST,
Ending
Wed Jan 04 2006 - 18:17:07 PST
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AMBER: Fluorine in MM-PBSA (AMBER8)
yuann.bioinfo.ndhu.edu.tw
(Wed Nov 30 2005 - 08:30:36 PST)
Re: AMBER: Fluorine in MM-PBSA (AMBER8)
sychen
(Wed Nov 30 2005 - 21:43:55 PST)
Re: AMBER: MM-PBSA: plot the "Ggas+Gsol" vs time
Holger Gohlke
(Wed Nov 30 2005 - 23:06:49 PST)
AMBER: Creating an Ester with Antechamber/Gaff
John O'Mahony
(Thu Dec 01 2005 - 01:46:40 PST)
Re: AMBER: Creating an Ester with Antechamber/Gaff
David A. Case
(Fri Dec 02 2005 - 20:05:16 PST)
AMBER: regarding ambpdb
S.Sundar Raman
(Thu Dec 01 2005 - 02:40:58 PST)
Re: AMBER: regarding ambpdb
Ilyas Yildirim
(Thu Dec 01 2005 - 02:54:03 PST)
Re: AMBER: regarding ambpdb
S.Sundar Raman
(Thu Dec 01 2005 - 05:39:31 PST)
Re: AMBER: regarding ambpdb
Carlos Simmerling
(Thu Dec 01 2005 - 05:57:39 PST)
Re: AMBER: Residual Dipolar Refinement
David A. Case
(Thu Dec 01 2005 - 06:22:11 PST)
AMBER: MD without a thermostat
Vlad Cojocaru
(Thu Dec 01 2005 - 07:32:57 PST)
Re: AMBER: MD without a thermostat
David A. Case
(Thu Dec 01 2005 - 11:42:51 PST)
AMBER: no thermostat versus very weak thermostat
Vlad Cojocaru
(Thu Dec 01 2005 - 07:57:15 PST)
AMBER: Some explanations of MM_PBSA .DECOMP OUTPUT file?
Peng Tao
(Thu Dec 01 2005 - 08:35:09 PST)
AMBER: Mg2+ issues of using MM-PB/GBSA
mingche Pan
(Thu Dec 01 2005 - 11:01:24 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
Carlos Simmerling
(Thu Dec 01 2005 - 11:26:11 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
David A. Case
(Thu Dec 01 2005 - 11:47:20 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
Thomas Cheatham
(Thu Dec 01 2005 - 21:27:21 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
mingche Pan
(Fri Dec 02 2005 - 08:32:15 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
mingche Pan
(Fri Dec 02 2005 - 10:09:28 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA
mingche Pan
(Fri Dec 02 2005 - 11:36:53 PST)
Re: AMBER: Mg2+ issues of using MM-PB/GBSA. .
Don.Bashford.stjude.org
(Mon Dec 05 2005 - 10:09:20 PST)
AMBER: Installation of AMBER8 on a PC with a Pentium EE type CPU
Cenk Andac
(Sat Dec 31 2005 - 10:24:30 PST)
AMBER: Radial Distribution functions by ptraj
Priti Hansia
(Thu Dec 01 2005 - 11:44:02 PST)
AMBER: Position restraints and Models
Steve Seibold
(Thu Dec 01 2005 - 12:54:06 PST)
AMBER: Questions about MM-PBSA in Amber8
zgleo
(Thu Dec 01 2005 - 21:04:26 PST)
AMBER: Problem in running AMBER 7 in solaris !
Pradipta Bandyopadhyay
(Fri Dec 02 2005 - 01:17:19 PST)
Re: AMBER: Problem in running AMBER 7 in solaris !
Atro Tossavainen
(Fri Dec 02 2005 - 04:14:42 PST)
AMBER: Problem with sander test suites in solaris !
Pradipta Bandyopadhyay
(Fri Dec 02 2005 - 06:26:05 PST)
AMBER: ptraj crash error
Simon Whitehead
(Fri Dec 02 2005 - 09:51:47 PST)
Re: AMBER: ptraj crash error
David E. Konerding
(Fri Dec 02 2005 - 10:24:35 PST)
AMBER: rotational motion in periodic simulation
Douali, Latifa
(Fri Dec 02 2005 - 10:50:28 PST)
Re: AMBER: rotational motion in periodic simulation
David A. Case
(Fri Dec 02 2005 - 15:06:22 PST)
AMBER: Replica-Exchange MD from AMBER8!
Peng Tao
(Fri Dec 02 2005 - 14:28:27 PST)
Re: AMBER: Replica-Exchange MD from AMBER8!
Carlos Simmerling
(Fri Dec 02 2005 - 14:49:25 PST)
Re: AMBER: Replica-Exchange MD from AMBER8!
Peng Tao
(Sat Dec 03 2005 - 09:13:15 PST)
Re: AMBER: Replica-Exchange MD from AMBER8!
Peng Tao
(Sat Dec 03 2005 - 12:19:12 PST)
Re: AMBER: Replica-Exchange MD from AMBER8!
Carlos Simmerling
(Sat Dec 03 2005 - 13:11:07 PST)
AMBER: ERROR in readParm: ...failed to find BONDS_WITHOUT_HYDROGEN
Rhoad, Jonathan S.
(Fri Dec 02 2005 - 15:02:36 PST)
Re: AMBER: Using OPLS atom types
David A. Case
(Fri Dec 02 2005 - 20:01:17 PST)
Re: AMBER: Using OPLS atom types
Bill Ross
(Sat Dec 03 2005 - 10:15:53 PST)
AMBER: parmchk bug fix
David A. Case
(Fri Dec 02 2005 - 20:22:21 PST)
AMBER: parmchk bug fix, with attachment
David A. Case
(Fri Dec 02 2005 - 20:33:20 PST)
AMBER: Alignment tensor and Interia tensor
RadhaKumari Yadav
(Sat Dec 03 2005 - 08:58:01 PST)
Re: AMBER: Alignment tensor and Interia tensor
David A. Case
(Sat Dec 03 2005 - 11:05:30 PST)
AMBER: The error during calculating PB with pbsa
zhli_2000.126.com
(Sun Dec 04 2005 - 20:39:19 PST)
Re: AMBER: The error during calculating PB with pbsa
Ray Luo
(Sun Dec 04 2005 - 18:16:09 PST)
AMBER: RMSD Calculations
Kara Di Giorgio
(Mon Dec 05 2005 - 07:22:03 PST)
Re: AMBER: RMSD Calculations
Carlos Simmerling
(Mon Dec 05 2005 - 08:00:23 PST)
Re: AMBER: RMSD Calculations
Kara Wald
(Mon Dec 05 2005 - 08:39:44 PST)
Re: AMBER: RMSD Calculations
Carlos Simmerling
(Mon Dec 05 2005 - 08:56:36 PST)
Re: AMBER: RMSD Calculations
kkirschn.hamilton.edu
(Mon Dec 05 2005 - 08:29:23 PST)
Re: AMBER: RMSD Calculations
Thomas Cheatham
(Mon Dec 05 2005 - 14:50:36 PST)
AMBER: AMBER vs QM: base pairing and stacking
Jiri Sponer
(Wed Dec 07 2005 - 10:22:02 PST)
AMBER: distance restraint simulation
Ed Pate
(Tue Dec 27 2005 - 10:36:44 PST)
Re: AMBER: distance restraint simulation
David A. Case
(Tue Dec 27 2005 - 12:31:03 PST)
AMBER: RESP: Question
Carlos Jaime
(Mon Dec 05 2005 - 09:43:16 PST)
Re: AMBER: RESP: Question
Piotr Cieplak
(Mon Dec 05 2005 - 10:00:37 PST)
Re: AMBER: RESP: Question
FyD
(Mon Dec 05 2005 - 13:31:32 PST)
Re: AMBER: RESP: Question
FyD
(Tue Dec 06 2005 - 05:13:49 PST)
Re[2]: AMBER: What does a crash mean while running a md simulation?
sychen
(Tue Dec 06 2005 - 04:16:49 PST)
RE: Re[2]: AMBER: What does a crash mean while running a md simulation?
Ross Walker
(Tue Dec 06 2005 - 08:54:11 PST)
AMBER: 6-thioguanine
E.A.Moore
(Tue Dec 06 2005 - 06:31:59 PST)
AMBER: MM_PBSA parameters
Nelson Fonseca
(Tue Dec 06 2005 - 07:26:55 PST)
AMBER: hi
Germán Sciaini
(Wed Dec 07 2005 - 02:51:06 PST)
Re: AMBER: hi
David A. Case
(Wed Dec 07 2005 - 12:01:52 PST)
AMBER: about resp
JAVIER PEREZ
(Wed Dec 07 2005 - 04:12:48 PST)
Re:AMBER: about resp
Kateryna Miroshnychenko
(Wed Dec 07 2005 - 05:50:07 PST)
AMBER: Relax in tLEaP ?
FyD
(Wed Dec 07 2005 - 06:00:38 PST)
Re: AMBER: Relax in tLEaP ?
David A. Case
(Wed Dec 07 2005 - 11:58:43 PST)
AMBER: Clustering - MMTSB Toolkit kclust
kkirschn.hamilton.edu
(Wed Dec 07 2005 - 10:43:52 PST)
Re: AMBER: Clustering - MMTSB Toolkit kclust
Adrian Roitberg
(Wed Dec 07 2005 - 12:46:50 PST)
AMBER: Adding/recognizing calcium atoms
Nitin Bhardwaj
(Wed Dec 07 2005 - 13:24:38 PST)
Re: AMBER: Adding/recognizing calcium atoms
Bill Ross
(Wed Dec 07 2005 - 13:32:05 PST)
AMBER: error about using ambmask
zhli_2000.126.com
(Thu Dec 08 2005 - 05:40:34 PST)
Re: AMBER: error about using ambmask
Viktor Hornak
(Thu Dec 08 2005 - 05:53:22 PST)
AMBER: Question on makeing up of missing atoms
Benjamin Juhl
(Fri Dec 09 2005 - 04:30:57 PST)
Re: AMBER: Question on makeing up of missing atoms
Carlos Simmerling
(Fri Dec 09 2005 - 04:57:06 PST)
AMBER: reading frcmod torsional parameters
ivan.mmb.pcb.ub.es
(Mon Dec 12 2005 - 05:44:36 PST)
Re: AMBER: reading frcmod torsional parameters
David A. Case
(Mon Dec 12 2005 - 08:56:02 PST)
Re: AMBER: reading frcmod torsional parameters
ivan.mmb.pcb.ub.es
(Tue Dec 13 2005 - 07:42:37 PST)
AMBER: question about mmpbsa
cui wei
(Mon Dec 12 2005 - 23:33:08 PST)
Re: AMBER: question about mmpbsa
Ray Luo
(Mon Dec 12 2005 - 19:34:13 PST)
Re: AMBER: question about mmpbsa
cui wei
(Tue Dec 13 2005 - 17:09:29 PST)
Re: AMBER: question about mmpbsa
Ray Luo
(Thu Dec 15 2005 - 10:08:55 PST)
AMBER: E of amber calculations
YoungJin Cho
(Wed Dec 14 2005 - 09:34:47 PST)
Re: AMBER: E of amber calculations
Carlos Simmerling
(Thu Dec 15 2005 - 04:30:08 PST)
RE: AMBER: E of amber calculations
Ross Walker
(Thu Dec 15 2005 - 08:23:46 PST)
AMBER: How to add water to calculate MMPBSA
Kitiyaporn Wittayanarakul
(Wed Dec 14 2005 - 10:06:53 PST)
Re: AMBER: How to add water to calculate MMPBSA
David A. Case
(Wed Dec 14 2005 - 15:50:13 PST)
Re: AMBER: How to add water to calculate MMPBSA. .
Don.Bashford.stjude.org
(Thu Dec 15 2005 - 09:13:30 PST)
Re: AMBER: How to add water to calculate MMPBSA. .
Thomas Cheatham
(Thu Dec 15 2005 - 10:09:47 PST)
AMBER: nmode error: GNORM is greater than the requested maximum
zhli_2000.126.com
(Wed Dec 14 2005 - 18:16:07 PST)
Re: AMBER: nmode error: GNORM is greater than the requested maximum
David A. Case
(Fri Dec 16 2005 - 14:08:21 PST)
AMBER: error with compiling amber8 with lam on intel pc clusters
Ye Mei
(Wed Dec 14 2005 - 19:36:54 PST)
Re: AMBER: error with compiling amber8 with lam on intel pc clusters
Xuebin Qiao
(Wed Dec 14 2005 - 23:57:24 PST)
RE: AMBER: error with compiling amber8 with lam on intel pc clusters
Ross Walker
(Thu Dec 15 2005 - 08:11:05 PST)
AMBER: about antechamber(amber8)
linfu
(Wed Dec 14 2005 - 23:51:16 PST)
Re: AMBER: about antechamber(amber8)
Carlos Simmerling
(Thu Dec 15 2005 - 04:45:59 PST)
RE: AMBER: about antechamber(amber8)
Junmei Wang
(Thu Dec 15 2005 - 07:54:40 PST)
AMBER: aniso and iso
Yam
(Thu Dec 15 2005 - 02:11:45 PST)
Re: AMBER: aniso and iso
David A. Case
(Thu Dec 15 2005 - 08:28:28 PST)
Re: AMBER: aniso and iso
Yam
(Mon Dec 19 2005 - 00:17:43 PST)
Re: AMBER: aniso and iso
Carlos Simmerling
(Mon Dec 19 2005 - 04:26:37 PST)
AMBER: parameters for fluorine atom
Morena Spreafico
(Thu Dec 15 2005 - 04:33:52 PST)
Re: AMBER: parameters for fluorine atom
Carlos Simmerling
(Thu Dec 15 2005 - 04:47:20 PST)
AMBER: Build for single precision
David Caliga
(Thu Dec 15 2005 - 07:31:02 PST)
Re: AMBER: Build for single precision
Robert Duke
(Thu Dec 15 2005 - 08:23:49 PST)
RE: AMBER: Build for single precision
Ross Walker
(Thu Dec 15 2005 - 08:29:35 PST)
AMBER: parallel AMBER on cluster
Kateryna Miroshnychenko
(Thu Dec 15 2005 - 10:16:17 PST)
Re: AMBER: parallel AMBER on cluster
Robert Duke
(Thu Dec 15 2005 - 10:37:22 PST)
RE: AMBER: parallel AMBER on cluster
Ross Walker
(Thu Dec 15 2005 - 10:38:57 PST)
Re: AMBER: parallel AMBER on cluster
Carlos Simmerling
(Thu Dec 15 2005 - 10:55:55 PST)
AMBER: | ERROR: Could not read coords from rst file
Jiapu.Zhang.csiro.au
(Thu Dec 15 2005 - 18:26:46 PST)
Re: AMBER: | ERROR: Could not read coords from rst file
Robert Duke
(Thu Dec 15 2005 - 19:14:35 PST)
AMBER: installation on a dual core
Barbault Florent
(Fri Dec 16 2005 - 06:00:08 PST)
Re: AMBER: installation on a dual core
Nelson Fonseca
(Fri Dec 16 2005 - 06:14:22 PST)
AMBER: About Salt concentration
Varsha Goyal
(Fri Dec 16 2005 - 16:03:05 PST)
Re: AMBER: About Salt concentration
Jiri Sponer
(Fri Dec 16 2005 - 17:05:13 PST)
Re: AMBER: About Salt concentration
Varsha Goyal
(Fri Dec 16 2005 - 17:37:45 PST)
RE: AMBER: About Salt concentration
David Cowburn
(Wed Dec 21 2005 - 13:33:15 PST)
AMBER: distance restraints
Ed Pate
(Sat Dec 17 2005 - 14:43:32 PST)
Re: AMBER: distance restraints
Carlos Simmerling
(Sat Dec 17 2005 - 15:08:28 PST)
AMBER: | ERROR: Could not read coords from *.rst
Jiapu.Zhang.csiro.au
(Sat Dec 17 2005 - 15:59:22 PST)
AMBER: No exchange among replicas in REMD!
Peng Tao
(Sun Dec 18 2005 - 14:01:28 PST)
Re: AMBER: No exchange among replicas in REMD!
Carlos Simmerling
(Sun Dec 18 2005 - 14:26:42 PST)
Re: AMBER: No exchange among replicas in REMD!
Peng Tao
(Sun Dec 18 2005 - 17:45:03 PST)
Re: AMBER: No exchange among replicas in REMD!
Carlos Simmerling
(Sun Dec 18 2005 - 18:23:14 PST)
Re: AMBER: No exchange among replicas in REMD!
Peng Tao
(Mon Dec 19 2005 - 06:57:30 PST)
Re: AMBER: No exchange among replicas in REMD!
Carlos Simmerling
(Mon Dec 19 2005 - 08:35:30 PST)
Re: AMBER: No exchange among replicas in REMD!
Peng Tao
(Mon Dec 19 2005 - 10:35:24 PST)
AMBER: No exchange among replicas in REMD!
Peng Tao
(Sun Dec 18 2005 - 14:11:06 PST)
Re: AMBER: No exchange among replicas in REMD!
Carlos Simmerling
(Sun Dec 18 2005 - 14:27:25 PST)
Re: AMBER: No exchange among replicas in REMD!
Adrian E. Roitberg
(Sun Dec 18 2005 - 15:16:22 PST)
Re: AMBER: No exchange among replicas in REMD!
Carlos Simmerling
(Sun Dec 18 2005 - 18:22:48 PST)
AMBER: a quistion about compile
cui wei
(Mon Dec 19 2005 - 04:10:07 PST)
Re: AMBER: a quistion about compile
David A. Case
(Mon Dec 19 2005 - 08:22:58 PST)
Re: AMBER: a quistion about compile
cui wei
(Mon Dec 19 2005 - 17:00:20 PST)
Re: AMBER: a quistion about compile
snowyowls
(Tue Dec 20 2005 - 05:30:07 PST)
Re: AMBER: a quistion about compile
David A. Case
(Tue Dec 20 2005 - 08:56:58 PST)
Re: AMBER: a quistion about compile
snowyowls
(Wed Dec 21 2005 - 06:53:21 PST)
Re: AMBER: a quistion about compile
David A. Case
(Wed Dec 21 2005 - 13:01:52 PST)
Re: AMBER: a quistion about compile
snowyowls
(Fri Dec 23 2005 - 04:32:52 PST)
Re: AMBER: a quistion about compile
Wei Zhang
(Mon Dec 19 2005 - 09:01:22 PST)
Re: AMBER: a quistion about compile
cui wei
(Mon Dec 19 2005 - 17:03:46 PST)
Re: AMBER: a quistion about compile
Wei Zhang
(Tue Dec 20 2005 - 08:35:34 PST)
AMBER: MD problems (SHAKE)
blakrose.gazeta.pl
(Mon Dec 19 2005 - 04:49:41 PST)
AMBER: Atoms restrain
Angelo Pugliese
(Mon Dec 19 2005 - 05:09:35 PST)
Re: AMBER: Atoms restrain
David A. Case
(Mon Dec 19 2005 - 08:20:25 PST)
AMBER: compiling leap with Xeon EM64 (suse linux 9.2)
HL Eastwood
(Mon Dec 19 2005 - 07:17:08 PST)
AMBER: re: leap compilation problems xeon EM64 processor
HL Eastwood
(Mon Dec 19 2005 - 07:30:57 PST)
AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 12:34:52 PST)
Re: AMBER: MD problems/shake
Thomas E. Cheatham, III
(Mon Dec 19 2005 - 12:53:40 PST)
Re: AMBER: MD problems/shake
Bill Ross
(Mon Dec 19 2005 - 12:59:04 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 14:45:43 PST)
Re: AMBER: MD problems/shake
Thomas E. Cheatham, III
(Mon Dec 19 2005 - 15:40:40 PST)
Re: AMBER: MD problems/shake
Thomas E. Cheatham, III
(Tue Dec 20 2005 - 11:20:26 PST)
Re: AMBER: MD problems/shake
Bill Ross
(Mon Dec 19 2005 - 15:14:10 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 15:33:12 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 15:44:59 PST)
Re: AMBER: MD problems/shake
Bill Ross
(Mon Dec 19 2005 - 15:50:33 PST)
Re: AMBER: MD problems/shake
Bill Ross
(Mon Dec 19 2005 - 15:54:01 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 16:03:08 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Mon Dec 19 2005 - 16:07:44 PST)
Re: AMBER: MD problems/shake
blakrose.gazeta.pl
(Tue Dec 20 2005 - 15:17:45 PST)
AMBER: rdc multiple tensors
dmcelh.uchicago.edu
(Mon Dec 19 2005 - 15:01:13 PST)
AMBER: Ligand problem
bybaker.itsa.ucsf.edu
(Mon Dec 19 2005 - 16:40:22 PST)
Re: AMBER: Ligand problem
blakrose.gazeta.pl
(Mon Dec 19 2005 - 17:02:54 PST)
Re: AMBER: Ligand problem
Suxin Zheng
(Mon Dec 19 2005 - 17:05:13 PST)
AMBER: Sander.LES questions
Bing Liu
(Tue Dec 20 2005 - 06:51:09 PST)
Re: AMBER: Sander.LES questions
Carlos Simmerling
(Tue Dec 20 2005 - 07:07:12 PST)
AMBER: rmsd
Anthony Cruz
(Tue Dec 20 2005 - 11:17:51 PST)
Fwd: AMBER: rdc multiple tensors
dmcelh.uchicago.edu
(Tue Dec 20 2005 - 09:55:51 PST)
AMBER: Re: Ligand problem
bybaker.itsa.ucsf.edu
(Tue Dec 20 2005 - 10:50:03 PST)
Re: AMBER: Re: Ligand problem
Ilyas Yildirim
(Tue Dec 20 2005 - 16:39:02 PST)
Re: AMBER: MD problems/shake-many thanks
blakrose.gazeta.pl
(Tue Dec 20 2005 - 15:04:24 PST)
AMBER: some questions about nmode
zhli_2000.126.com
(Tue Dec 20 2005 - 18:30:22 PST)
AMBER: No skew or curtosis when zero variance in moment
Ye Mei
(Wed Dec 21 2005 - 07:56:43 PST)
Re: AMBER: No skew or curtosis when zero variance in moment
David A. Case
(Thu Dec 22 2005 - 10:14:25 PST)
AMBER: lib-4324 : UNRECOVERABLE library error
lv haiting
(Wed Dec 21 2005 - 18:31:46 PST)
Re: AMBER: lib-4324 : UNRECOVERABLE library error
Thomas Cheatham
(Wed Dec 21 2005 - 19:16:22 PST)
Re: AMBER: lib-4324 : UNRECOVERABLE library error
lv haiting
(Wed Dec 21 2005 - 20:21:50 PST)
Re: AMBER: antechamber problem
bybaker.itsa.ucsf.edu
(Wed Dec 21 2005 - 21:39:24 PST)
Re: AMBER: antechamber problem
Ilyas Yildirim
(Fri Dec 30 2005 - 16:25:38 PST)
AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble.
Sergey Krishtal
(Wed Dec 21 2005 - 22:15:14 PST)
Re: AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble.
David A. Case
(Thu Dec 22 2005 - 11:56:36 PST)
AMBER: Merry Xmas
Angelo Pugliese
(Thu Dec 22 2005 - 03:43:14 PST)
AMBER: increase the limit of restraintmask
Sichun Yang
(Thu Dec 22 2005 - 10:58:14 PST)
AMBER: does the result of H bond is consistent with the ∆Eele of MM_PBSA?
haixiao jin
(Thu Dec 22 2005 - 20:12:46 PST)
RE: AMBER: does the result of H bond is consistent with the ?Eele of MM_PBSA?
Yong Duan
(Thu Dec 22 2005 - 22:43:53 PST)
Re: AMBER: does the result of H bond is consistent with the ?Eele of MM_PBSA?
cristian obiol
(Fri Dec 23 2005 - 03:01:42 PST)
AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
Priti Hansia
(Fri Dec 23 2005 - 03:28:57 PST)
Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
David A. Case
(Tue Dec 27 2005 - 08:17:49 PST)
Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
Priti Hansia
(Tue Dec 27 2005 - 09:35:41 PST)
Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
David A. Case
(Tue Dec 27 2005 - 11:18:06 PST)
Re: AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN
Priti Hansia
(Wed Dec 28 2005 - 05:05:56 PST)
AMBER: the averaged structure VS the specific snapshot
haixiao jin
(Thu Dec 22 2005 - 20:24:04 PST)
RE: AMBER: the averaged structure VS the specific snapshot
Yong Duan
(Thu Dec 22 2005 - 22:38:00 PST)
AMBER: ambpdb TER problems
Sam
(Fri Dec 23 2005 - 08:23:26 PST)
Re: AMBER: ambpdb TER problems
David A. Case
(Fri Dec 23 2005 - 17:53:50 PST)
Re: AMBER: ambpdb TER problems
samuel.arey.epfl.ch
(Mon Dec 26 2005 - 11:26:27 PST)
Re: AMBER: ambpdb TER problems
David A. Case
(Mon Dec 26 2005 - 18:08:26 PST)
Re: AMBER: ambpdb TER problems
Sam
(Tue Dec 27 2005 - 08:23:39 PST)
Re: AMBER: ambpdb TER problems
David A. Case
(Tue Dec 27 2005 - 12:30:48 PST)
Re: AMBER: ambpdb TER problems
Sam
(Wed Dec 28 2005 - 09:17:14 PST)
Re: AMBER: ambpdb TER problems
David A. Case
(Fri Dec 30 2005 - 10:05:10 PST)
Re: AMBER: ambpdb TER problems
Bill Ross
(Mon Dec 26 2005 - 13:27:07 PST)
AMBER: To post or mail to the list (subscribers only)
ping jiang
(Fri Dec 23 2005 - 12:07:45 PST)
AMBER: (no subject)
ping jiang
(Fri Dec 23 2005 - 12:46:58 PST)
Re: AMBER: (no subject)
Thomas Cheatham
(Fri Dec 23 2005 - 13:37:57 PST)
Re: AMBER: (no subject)
David A. Case
(Fri Dec 23 2005 - 17:43:28 PST)
Re: AMBER: (no subject)
ping jiang
(Fri Dec 23 2005 - 18:25:19 PST)
AMBER: problem with improper torsions in parmchk
Kateryna Miroshnychenko
(Mon Dec 26 2005 - 08:55:54 PST)
AMBER: building amino acid based surfactants?
Eugene Billiot
(Mon Dec 26 2005 - 13:25:33 PST)
Re: AMBER: building amino acid based surfactants?
David A. Case
(Mon Dec 26 2005 - 17:53:19 PST)
AMBER: problem with ssh and xleap
A D
(Tue Dec 27 2005 - 12:12:51 PST)
Re: AMBER: problem with ssh and xleap
Scott Brozell
(Wed Dec 28 2005 - 14:02:48 PST)
Re: AMBER: problem with ssh and xleap
A D
(Fri Dec 30 2005 - 19:06:15 PST)
AMBER: problem of calculate the charge
ping jiang
(Tue Dec 27 2005 - 16:47:16 PST)
Re: AMBER: problem of calculate the charge
David A. Case
(Fri Dec 30 2005 - 09:58:47 PST)
Re: AMBER: problem of calculate the charge
ping jiang
(Fri Dec 30 2005 - 10:48:41 PST)
AMBER: problem of calculate the charge2
ping jiang
(Tue Dec 27 2005 - 18:17:05 PST)
AMBER: Question about partial charge for ligand molecules
Woojin Lee
(Wed Dec 28 2005 - 18:37:47 PST)
AMBER: non bond over flow
S.Sundar Raman
(Wed Dec 28 2005 - 19:50:27 PST)
RE: AMBER: non bond over flow
Ross Walker
(Thu Dec 29 2005 - 08:15:35 PST)
AMBER:how to deal with metal ion?
snowyowls
(Thu Dec 29 2005 - 22:24:58 PST)
Re: AMBER:how to deal with metal ion?
samuel.arey.epfl.ch
(Fri Dec 30 2005 - 02:56:08 PST)
Re: AMBER:how to deal with metal ion?
samuel.arey.epfl.ch
(Fri Dec 30 2005 - 03:05:39 PST)
Re: AMBER:how to deal with metal ion?
Tim Meyer
(Fri Dec 30 2005 - 08:05:06 PST)
Re: AMBER:how to deal with metal ion?
Tim Meyer
(Fri Dec 30 2005 - 08:09:07 PST)
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Wed Jan 04 2006 - 18:17:07 PST
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