Re: AMBER: Problem in running AMBER 7 in solaris !

From: Atro Tossavainen <>
Date: Fri, 2 Dec 2005 14:14:42 +0200 (EET)

Dear Dr Bandyopadhyay

> /export/home/pradipta/amber7/exe/sander: fatal:
> open failed: No such file or directory
> Killed
> However, actually both (in /usr/lib) and
> (/usr/local/lib) are present. A 'which' command shows that the path is
> defined.

The program needed to be compiled with -R/usr/local/lib. If you can go
back and recompile with this linker flag, it would be great. If you
can't do that, you can accomplish more or less the same results by
setting LD_LIBRARY_PATH to that directory before running the program.

Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
+358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
< URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Fri Dec 02 2005 - 12:53:00 PST
Custom Search