Amber Archive Apr 2023: by subject

[AMBER] [Sender Not Verified] correlation matrix
- Steinbrecher, Thomas via AMBER (Tue Apr 18 2023 - 05:58:42 PDT)
[AMBER] [Sender Not Verified] Help in determining no. of molecules for ionic liquid
- Steinbrecher, Thomas via AMBER (Sun Apr 23 2023 - 23:53:47 PDT)
[AMBER] amber19 compilation
- David A Case via AMBER (Wed Apr 26 2023 - 13:10:50 PDT)
- Dulal Mondal via AMBER (Wed Apr 26 2023 - 09:43:42 PDT)
[AMBER] compiling amber 22 with gcc 11 / cuda 11.6: cuda error with mdgx
- Vlad Cojocaru via AMBER (Sun Apr 02 2023 - 08:50:20 PDT)
[AMBER] constant ph calculations
- Vinicius Wilian Cruzeiro via AMBER (Wed Apr 19 2023 - 09:35:45 PDT)
- Hoang, Oanh Tu via AMBER (Wed Apr 19 2023 - 04:32:27 PDT)
[AMBER] Coordination Number
- angad sharma via AMBER (Sun Apr 09 2023 - 15:07:58 PDT)
[AMBER] correlation matrix
- Dulal Mondal via AMBER (Tue Apr 18 2023 - 05:44:34 PDT)
[AMBER] cphstats in CpHMD analysis
- Jason Swails via AMBER (Fri Apr 28 2023 - 06:10:07 PDT)
- Dulal Mondal via AMBER (Wed Apr 26 2023 - 00:15:37 PDT)
[AMBER] density input
- David Case via AMBER (Mon Apr 24 2023 - 19:03:00 PDT)
- Andriy Kovalenko via AMBER (Mon Apr 24 2023 - 18:52:46 PDT)
[AMBER] Fwd: Query regarding restarting the replica exchange molecular dynamics simulation
- Munazzah Fatima Ansari via AMBER (Wed Apr 26 2023 - 06:00:28 PDT)
[AMBER] Help in determining no. of molecules for ionic liquid
- Delwakkada Liyanage, Senal Dinuka via AMBER (Fri Apr 21 2023 - 19:40:50 PDT)
[AMBER] Installing AmberTools18
- SATYAJIT KHATUA via AMBER (Wed Apr 12 2023 - 21:01:21 PDT)
- SATYAJIT KHATUA via AMBER (Wed Apr 12 2023 - 20:48:58 PDT)
- CHAN LOK YUNG via AMBER (Wed Apr 12 2023 - 20:16:31 PDT)
[AMBER] Internal pyrophosphates with Amber
- Harvey Dale via AMBER (Tue Apr 04 2023 - 15:38:51 PDT)
[AMBER] Introducing ChatGPDB - The Ultimate Biomolecular Simulation Assistant
- Charo del Genio via AMBER (Sat Apr 01 2023 - 09:01:16 PDT)
- Francesca Mocci via AMBER (Sat Apr 01 2023 - 08:44:48 PDT)
- Jason Swails via AMBER (Sat Apr 01 2023 - 07:59:31 PDT)
[AMBER] issue with pdb4amber
- Hai Nguyen via AMBER (Wed Apr 12 2023 - 11:10:49 PDT)
- Andriy Kovalenko via AMBER (Tue Apr 11 2023 - 14:14:04 PDT)
- David A Case via AMBER (Tue Apr 11 2023 - 13:22:32 PDT)
- Hai Nguyen via AMBER (Tue Apr 11 2023 - 12:52:44 PDT)
- Hai Nguyen via AMBER (Tue Apr 11 2023 - 11:22:07 PDT)
[AMBER] MMPBSA help - Sarah Abraham
- Bill Miller III via AMBER (Fri Apr 07 2023 - 16:56:25 PDT)
- Abraham, Sarah via AMBER (Thu Apr 06 2023 - 06:24:05 PDT)
[AMBER] Multisander,
- Vilhelm Ekberg via AMBER (Wed Apr 26 2023 - 07:35:55 PDT)
[AMBER] Not able to reproduce MMPBSA values using data from the tutorial
- Ray Luo via AMBER (Mon Apr 24 2023 - 10:14:17 PDT)
- devendra.prajapat.cys19--- via AMBER (Mon Apr 24 2023 - 04:01:17 PDT)
[AMBER] p5 to C.3 conversion in ATOMTYPE_CHECK.TAB
- Christopher Corbo via AMBER (Mon Apr 03 2023 - 10:42:17 PDT)
[AMBER] pmemd.cuda test possible failure
- David A Case via AMBER (Wed Apr 05 2023 - 14:13:42 PDT)
- Freddy Bernal via AMBER (Tue Apr 04 2023 - 05:12:11 PDT)
[AMBER] Post-doc position open for one year in my lab in Nantes, France
- Téletchéa Stéphane via AMBER (Fri Apr 07 2023 - 10:02:11 PDT)
[AMBER] protonation state of a residue e.g. Histidine
- Dulal Mondal via AMBER (Sat Apr 29 2023 - 09:47:48 PDT)
[AMBER] Query regarding atomicfluct command
- Faezeh Salehi via AMBER (Tue Apr 25 2023 - 22:39:01 PDT)
- Faezeh Salehi via AMBER (Mon Apr 24 2023 - 12:40:13 PDT)
- Roy, Rajarshi via AMBER (Mon Apr 24 2023 - 12:38:24 PDT)
- Thomas Cheatham via AMBER (Mon Apr 24 2023 - 11:25:10 PDT)
- SATYAJIT KHATUA via AMBER (Mon Apr 24 2023 - 11:25:00 PDT)
- SATYAJIT KHATUA via AMBER (Mon Apr 24 2023 - 11:06:54 PDT)
- SATYAJIT KHATUA via AMBER (Mon Apr 24 2023 - 10:28:20 PDT)
- SATYAJIT KHATUA via AMBER (Mon Apr 24 2023 - 09:51:20 PDT)
- Roy, Rajarshi via AMBER (Mon Apr 24 2023 - 09:41:57 PDT)
[AMBER] Question about "nfft1 must be in the range of 6 to 512!"
- Dr. Anselm Horn via AMBER (Fri Apr 21 2023 - 08:30:26 PDT)
- Dr. Anselm Horn via AMBER (Thu Apr 20 2023 - 07:17:29 PDT)
[AMBER] Question about implementing steered MD in Amber
- SONAL GAHLAWAT via AMBER (Fri Apr 07 2023 - 17:43:02 PDT)
[AMBER] Release of AmberTools23
- David A Case via AMBER (Sun Apr 30 2023 - 04:57:46 PDT)
[AMBER] Repulsive restraints between two atoms or two groups of atoms
- Carlos Simmerling via AMBER (Tue Apr 04 2023 - 04:53:36 PDT)
- Antonio Frances Monerris via AMBER (Tue Apr 04 2023 - 04:33:14 PDT)
[AMBER] Restraining Counterions in Regular MD Simulations
- Rory Crean via AMBER (Wed Apr 26 2023 - 01:23:38 PDT)
- David A Case via AMBER (Tue Apr 25 2023 - 13:49:51 PDT)
- Christina Bergonzo via AMBER (Tue Apr 25 2023 - 08:13:20 PDT)
- Rory Crean via AMBER (Tue Apr 25 2023 - 03:17:46 PDT)
[AMBER] Restraints not read by Sander for QM/MM
- Abdullah Bin Faheem via AMBER (Thu Apr 20 2023 - 00:28:10 PDT)
- David A Case via AMBER (Wed Apr 19 2023 - 17:05:51 PDT)
- Carlos Simmerling via AMBER (Wed Apr 19 2023 - 12:49:16 PDT)
- Abdullah Bin Faheem via AMBER (Wed Apr 19 2023 - 12:31:54 PDT)
- Carlos Simmerling via AMBER (Wed Apr 19 2023 - 12:13:21 PDT)
- Abdullah Bin Faheem via AMBER (Wed Apr 19 2023 - 12:09:50 PDT)
[AMBER] Separating a trajectory by output from clusterdihedral
- Daniel Roe via AMBER (Sun Apr 23 2023 - 12:11:10 PDT)
- Osman, Roman via AMBER (Sun Apr 23 2023 - 10:38:14 PDT)
[AMBER] taking Center of mass of 2 atoms in umbrella sampling
- angad sharma via AMBER (Fri Apr 28 2023 - 10:28:23 PDT)
[AMBER] Thermodynamic property of the system
- David Case via AMBER (Fri Apr 07 2023 - 07:18:00 PDT)
- Dulal Mondal via AMBER (Fri Apr 07 2023 - 06:36:52 PDT)
[AMBER] TI calculation regarding charge change in TI region.
- Michael T Kim via AMBER (Wed Apr 05 2023 - 15:29:25 PDT)
- Michael T Kim via AMBER (Mon Apr 03 2023 - 10:30:00 PDT)
[AMBER] Using atom OD with parmchk and ff15ipq
- aamin.sagar--- via AMBER (Tue Apr 25 2023 - 06:28:10 PDT)
- Carlos Simmerling via AMBER (Tue Apr 25 2023 - 06:34:10 PDT)
- amin sagar via AMBER (Mon Apr 24 2023 - 06:25:25 PDT)
[AMBER] Why uinsg a cutoff or 8.0 for proteins and 10.0 for proteins embeded in a membrane?
- Téletchéa Stéphane via AMBER (Mon Apr 17 2023 - 09:32:42 PDT)
- Téletchéa Stéphane via AMBER (Mon Apr 17 2023 - 09:29:16 PDT)
[AMBER] Why using a cutoff or 8.0 for proteins and 10.0 for proteins embeded in a membrane?
- Téletchéa Stéphane via AMBER (Mon Apr 17 2023 - 09:35:38 PDT)
[AMBER] Widom insertion method, calculate chemical potential
- Alexej Jerschow via AMBER (Thu Apr 13 2023 - 06:31:56 PDT)
[AMBER] Wrong Coordination Number !
- angad sharma via AMBER (Thu Apr 06 2023 - 02:44:25 PDT)
[AMBER] {SPAM?} Separating a trajectory by output from clusterdihedral
- Osman, Roman via AMBER (Sun Apr 23 2023 - 11:36:27 PDT)
- Matthew Guberman-Pfeffer via AMBER (Sun Apr 23 2023 - 11:15:28 PDT)
Why uinsg a cutoff or 8.0 for proteins and 10.0 for proteins embeded in a membrane?
- Steinbrecher, Thomas via AMBER (Mon Apr 17 2023 - 23:21:11 PDT)

Amber Archive Apr 2023 by subject