Amber Archive Sep 2005 by subject
- AMBER: (no subject)
- AMBER: about radius of Br in MMPBSA calculation
- AMBER: about the %occupied of hydrogen bond
- AMBER: addles question
- AMBER: AMBBER: ptraj question
- AMBER: Amber 8 and PATH buffer overflow
- AMBER: Amber 8: questions about free energy perturbation
- AMBER: AMBER antechamber; dimenion size
- AMBER: Amber compilation on opteron with PGI compiler
- AMBER: amber compilation on SGI ALTIX 350 (TEST FAILD)
- AMBER: AMBER7 xleap problem
- AMBER: Amber8 compilation error
- AMBER: amber8 parallel sander
- AMBER: antechamber + mopac failure
- AMBER: antechamber -- missing improper torsions
- AMBER: Antechamber error "Cannot successfully assign bond type for this molecule"
- AMBER: antechamber problem
- AMBER: atommask question
- AMBER: broblem of replica exchange MD with polarizable force field
- AMBER: Build an acetone Box
- AMBER: building monosaccharides with glycam force field
- AMBER: Can I get each corresponding sanpshots' delta delta energy term from mm_pbsa
- AMBER: carnal problem
- AMBER: charges
- AMBER: clustering
- AMBER: Could not open file (Melb.mdcrd) with mode (r)
- AMBER: creating a resp input file without Gaussian.
- AMBER: creating a respgen file without Gaussian.
- AMBER: D-enantiomers
- AMBER: Equilibration MD
- AMBER: Equillibration run
- AMBER: Error in "restrt" output file
- AMBER: Error in MD run!
- AMBER: Fail to run parallel
- AMBER: fixing protein for minimisation of solvent
- AMBER: GB refinement of CYANA structures
- AMBER: generation of conformations for multi-conf. RESP fitting
- AMBER: Glycam-parameters and antechamber
- AMBER: H-bond energy
- AMBER: highly fluctuating reaction field energies in MM/PBSA
- AMBER: How does leap choose params ?
- AMBER: How to build a crystal structure from a unit cell pdb?
- AMBER: How to get PDB structures optimized for RED-II
- AMBER: How to split LES trajectory using TRAJ
- AMBER: ibelly and free energy calculations
- AMBER: improper torsion parameters
- AMBER: Invalid Digit "*"
- AMBER: Leap compilation with pgf77 under 64bit platform
- AMBER: leap segmentation fault-bugfix1 didn't work
- AMBER: Linear Interaction Energy
- AMBER: Making prep file of sugar derivative
- AMBER: masks in ptraj - Hbond analysis
- AMBER: Mg2+ radius in my_parse_delphi.siz
- AMBER: Minimization in sander and nmode
- AMBER: MM-PBSA error
- AMBER: MM_PB/GBSA
- AMBER: mm_pbsa example number 3
- AMBER: mm_pbsa: problems with dielec constant when using
- AMBER: Modified RNA Bases
- AMBER: New information about AmberFFC
- AMBER: no statistics part
- AMBER: number of processors
- AMBER: Opinion needed-Solvents
- AMBER: parralel test
- AMBER: Problem during Production
- AMBER: Problem finding transition state using NMODE
- AMBER: Problem with installation AMBER8 on Solaris 8 using original SUN compilers
- AMBER: ptraj problem
- AMBER: Query: Problem during Production
- AMBER: Quick question about xLeap
- AMBER: RED and Multi-Orientation
- AMBER: RED-II failure to recognize GAMESS output
- AMBER: REM error
- AMBER: roar question
- AMBER: sander prob
- AMBER: solvation energy
- AMBER: STARTING WHERE I LEFT OFF
- AMBER: strange case
- AMBER: Trajectory Problem
- AMBER: Tyrosine CZ Parameterization Bug continues in Amber 8
- AMBER: umbrella sampling output question
- AMBER: Unformatted restart file cannot be read by sander when PME in use (AMBER8)
- AMBER: unstable MD velocities
- AMBER: using SALTCON for human cell cytoplasm
- AMBER: Xleap menu bar problems
- Last message date: Fri Sep 30 2005 - 15:53:00 PDT
- Archived on: Wed Nov 27 2024 - 05:53:37 PST
