Can you see and open the file Melb.mdcrd in the directory that you are
calling the program from?
On 9/19/05, Varsha Goyal <vgusp.yahoo.ca> wrote:
>
> Dear Amber Users,
> I was following Tutorial8 (Case study) for my protein
> and in analysing results, i was trying to get frame
> with lowest energy but its not working
> my input and output looks like this:
>
> > $AMBERHOME/exe/ptraj prmtop.top <
> extract_frame.trajin > extract_frame.out
> Read in control variables
> Read in atom names...
> Read in charges...
> Read in masses...
> Read in IAC (atoms involved in L-J)...
> Read in NUMEX (index to excl atom list)...
> Read in NNO (index for nonbond of .type)...
> Read in residue labels...
> Read in the residue to atom pointer list...
> Read in bond parameters RK and REQ...
> Read in angle parameters TK and TEQ...
> Read in dihedral parameters PK, PN and PHASE...
> Read in SOLTY...
> Read in L-J parameters CN1 and CN2...
> Read in info for bonds w/ hydrogen...
> Read in info for bonds w/out hydrogen...
> Read in info for angles w/ hydrogen...
> Read in info for angles w/out hydrogen...
> Read in info for dihedrals w/ hydrogen...
> Read in info for dihedrals w/out hydrogen...
> Read in excluded atom list...
> Read in h-bond parameters: AG, BG, and HBCUT...
> Read in atomic symbols (types)...
> Read in tree information...
> Read in the JOIN info...
> Read in the IROTAT info...
> Read in box information...
> Checking coordinates: Melb.mdcrd
>
> Could not open file (Melb.mdcrd) with mode (r)
>
> Thanks,
> Varsha Gupta
>
>
>
>
>
>
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Received on Mon Sep 19 2005 - 18:53:00 PDT
