AMBER: MM_PB/GBSA

From: Zhang Bing <nnizb.nus.edu.sg>
Date: Fri, 30 Sep 2005 11:13:05 +0800

Dear all:

 

I am dealing with some protein-inhibitor systems and want to calculate
the binding energy between the receptor and the drugs. However, the
difference between the IC50 values from experiments is very very small,
for instance, 0.16um for one, and 0.1um for another. So, I was wondering
whether MM_PB/GBSA is accurate enough to calculate energies for such
complexes. I am not sure about this only from literatures. So I drop it
here, any advice from you will be greatly appreciated!

 

Regards,

 

Zhang Bing

 

NUSNNI


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Received on Fri Sep 30 2005 - 04:53:00 PDT
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