Sorry, it's my fault. It has nothing to do with unbonded atoms and
bugfix1. The problem arise when trying to save pdb or prmtop of unit
containing an atom that doesn't belong to any residue. I should
read page 36 of manual with more attention probably. Though it would
be good if program gave some warnings before crash in this case.
Regards,
Katya
> When saving pdb or prmtop of unit containing unbonded hydrogen atom
> in xleap I get the segmentation fault error. I'm using AMBER8 under RH
> Linux 9.0 and I've applied bugfix 1 and recompiled AMBER. Use of
> the unmodified Bondi GB radii (set default PBradii bondi) didn't
> help either. It looks like the problem is in somthing else... Or I
> misunderstand something...
>
> Katya
********************************************
Kateryna Miroshnychenko
post-graduate student
Department of Biological Physics,
Institute of Radiophysics and Electronics,
National Academy of Sciences of Ukraine,
Kharkiv, Ukraine
E-mail:kateryna_mirosh.ire.kharkov.ua
********************************************
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Received on Tue Sep 13 2005 - 09:53:00 PDT
