Dear all,
I wish to make clustering.
I saw in the section tutorial in particular in the tutorial 4 ( Peptide Folding
- Folding TRPCage) of the PSC 2005 Workshops tutorials the presence of
clustering.
my question is as follows: I don't understand the parameter radius in the
following order
kclust -mode rmsd -centroid -cdist -heavy -lsqfit \
-radius 6 -maxerr 1 -iterate \
../clustfils > ../Centroid_6
which is the definition of this parameter?
it has relationship with the radius of gyration
where can I find information?
thanks for advance
sincerely yours
julien
--
Julien Pecher
Laboratoire de Biophysique, DMAG, INERIS-EA 3901
Faculte de Pharmacie, 1 rue des Louvels
80037 Amiens Cedex 1, France
Tel: +33 (0)3 2282-7498 Fax: +33 (0)3 2282-7469
email: julien.pecher.u-picardie.fr
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Received on Thu Sep 22 2005 - 13:53:00 PDT
