Amber Archive Jun 2001: by author

A. Ababou
- My input problem in amber6 ! (Mon Jun 25 2001 - 08:54:18 PDT)
A.Madhumalar
- tleap input format (Wed Jun 27 2001 - 06:20:02 PDT)
- compiling amber6 in linux clusters (Sun Jun 03 2001 - 09:35:16 PDT)
Andreas Svrcek-Seiler
- Is there a potential for speedup in the GB-code ? (Fri Jun 15 2001 - 08:05:36 PDT)
- a correction, sorry (Fri Jun 08 2001 - 06:43:39 PDT)
- Re: error message. (Fri Jun 08 2001 - 04:36:41 PDT)
- Re: ice cube flying through space (Sat Jun 02 2001 - 05:54:55 PDT)
- Re: sander 6 warming up (Fri Jun 01 2001 - 06:53:35 PDT)
Andrew Hoofnagle
- How is the random number used to generate random velocities? (Mon Jun 11 2001 - 10:02:37 PDT)
Anton B. Guliaev
- 2'-deoxy-uracil (Wed Jun 06 2001 - 15:36:01 PDT)
Bill Ross
- Re: Problems with AMBER (Fri Jun 29 2001 - 16:23:06 PDT)
- Re: TIP3P (Thu Jun 28 2001 - 23:34:47 PDT)
- Re: Problems with AMBER (Thu Jun 28 2001 - 19:49:52 PDT)
- Re: Problems with AMBER (Thu Jun 28 2001 - 19:49:52 PDT)
- Re: Wrong compilation artifacts on ES40s? (Sun Jun 24 2001 - 23:51:20 PDT)
- Re: Wrong compilation artifacts on ES40s? (Sun Jun 24 2001 - 12:58:33 PDT)
- Re: Wrong compilation artifacts on ES40s? (Sun Jun 24 2001 - 10:59:27 PDT)
- Re: Linux stability (Fri Jun 22 2001 - 13:51:17 PDT)
- Re: Non-standard DNA bases (Tue Jun 12 2001 - 22:29:40 PDT)
- Re: Non-standard DNA bases (Tue Jun 12 2001 - 14:39:05 PDT)
- Re: atom coordinates (Mon Jun 11 2001 - 16:29:39 PDT)
- Re: AMBER on Hitachi SR8000 (Thu Jun 07 2001 - 14:43:48 PDT)
- Re: How to minimization of Average structure? (Sun Jun 03 2001 - 11:24:15 PDT)
- Re: Adding crystal water using tleap. (Sun Jun 03 2001 - 10:19:32 PDT)
bxiong
- (no subject) (Fri Jun 22 2001 - 19:11:09 PDT)
Carlos Simmerling
- Re: coordinate blowup in sander (Fri Jun 15 2001 - 11:46:36 PDT)
Christoph Sotriffer
- Re: sander_classic no mdcrd (Fri Jun 01 2001 - 06:53:27 PDT)
Chuck Schneider
- re: Amber compiling on Alpha Clusters Redhat Linux (Thu Jun 28 2001 - 05:08:41 PDT)
Daniel Flint
- sander_classic no mdcrd (Fri Jun 01 2001 - 07:06:10 PDT)
- sander_classic no mdcrd (Fri Jun 01 2001 - 07:06:10 PDT)
David Bevan
- Animating normal modes (Mon Jun 11 2001 - 10:36:39 PDT)
David Case
- Re: folding simulations (Thu Jun 28 2001 - 17:27:00 PDT)
David Konerding
- Re: Non-standard DNA bases (Wed Jun 13 2001 - 07:41:09 PDT)
Dr Chris L. Brown
- GFP chromophore force field parameters (Wed Jun 13 2001 - 18:31:56 PDT)
Dr Richard Bryce
- AMBER parameter database (Fri Jun 29 2001 - 09:47:18 PDT)
Elizabeth K. White
- folding simulations (Thu Jun 28 2001 - 14:52:19 PDT)
- equilibrating water in sander (Wed Jun 20 2001 - 16:00:00 PDT)
- make test.all (Wed Jun 06 2001 - 14:22:46 PDT)
Eoin Galligan
- gradual warming + partial solvation (Mon Jun 25 2001 - 07:59:44 PDT)
- PMF calculations (Tue Jun 19 2001 - 03:58:26 PDT)
- leap not reaing torsion from frcmod file (Thu Jun 07 2001 - 06:45:22 PDT)
- error msg in leap (Wed Jun 06 2001 - 10:30:43 PDT)
- free energy method (Wed Jun 06 2001 - 02:34:53 PDT)
Florian Barth
- AMBER on Hitachi SR8000 (Thu Jun 07 2001 - 13:22:32 PDT)
Francois Dupradeau
- AmberFFC version 1.2 (Sun Jun 24 2001 - 13:49:29 PDT)
go5612gwe_at_arabia.com
- WHY NOT TRY IT? (Mon Jun 18 2001 - 12:02:17 PDT)
Guanglei Cui
- torsion parameters needed (Thu Jun 28 2001 - 22:40:06 PDT)
- TIP3P (Thu Jun 28 2001 - 22:22:57 PDT)
- gb with explicit water molecules (Fri Jun 22 2001 - 09:05:52 PDT)
- igb=1 error message: Unable to find bonded partner for atom 239 (Sat Jun 09 2001 - 13:46:03 PDT)
iec_at_emirates.net.ae
- An Invitation From The Middle East Chemical Industry (Sat Jun 16 2001 - 12:34:21 PDT)
J Suggs
- Non-standard DNA bases (Tue Jun 12 2001 - 16:32:21 PDT)
jim caldwell
- resp charges: ccl4 jag vs. g98 (Wed Jun 27 2001 - 15:51:49 PDT)
- Resp input confusion. (Tue Jun 26 2001 - 14:55:07 PDT)
- Re: begginer's question. (Tue Jun 26 2001 - 12:20:32 PDT)
- Re: CCl4 charge problem... (Fri Jun 22 2001 - 14:03:13 PDT)
- Re: AMBER (Tue Jun 19 2001 - 15:30:17 PDT)
- Re: water parameters+TIP3 water model (Tue Jun 19 2001 - 11:52:04 PDT)
- Re: coordinate blowup in sander (Fri Jun 15 2001 - 10:54:53 PDT)
- reflector limitations (Wed Jun 06 2001 - 07:51:05 PDT)
Jithesh P.V.
- PDB old to new (Tue Jun 26 2001 - 23:48:06 PDT)
John Finke
- Re: Problems with AMBER (Fri Jun 29 2001 - 15:55:06 PDT)
- Problems with AMBER (Thu Jun 28 2001 - 18:04:52 PDT)
Jones de Andrade
- begginer's question about RESP and GAMESS (Tue Jun 26 2001 - 10:44:02 PDT)
- RESP X GAMESS Dummie Question (Mon Jun 18 2001 - 10:22:11 PDT)
Jung-Hsing Lin
- Re: iwrap & TIP3P model water (Fri Jun 22 2001 - 09:53:00 PDT)
Katherine Wallis Abold
- summary of Zn+2 van der Waals radii responses (Fri Jun 08 2001 - 07:43:03 PDT)
- Zn+2 van der Waals radii (Thu Jun 07 2001 - 15:16:14 PDT)
- LIE method (Wed Jun 06 2001 - 14:14:10 PDT)
kian kani
- Machine file for sgi (Mon Jun 25 2001 - 10:25:21 PDT)
- Error in Gibbs (Tue Jun 05 2001 - 09:42:48 PDT)
Kristin Lynne Meagher
- 90 degree phase offset in AMBER? (Mon Jun 04 2001 - 10:14:27 PDT)
Marcela Madrid
- ice cube flying through space (Fri Jun 01 2001 - 08:10:53 PDT)
- ice cube flying through space (Fri Jun 01 2001 - 08:10:53 PDT)
Marco Punta
- AMBER on mpi (Wed Jun 27 2001 - 10:39:46 PDT)
Margaret Cheung
- error message. (Fri Jun 08 2001 - 00:24:07 PDT)
Michael Cooney
- coordinate blowup in sander (Fri Jun 15 2001 - 09:29:05 PDT)
Nicole Silvester
- emin after molecular dynamics (Fri Jun 22 2001 - 00:41:06 PDT)
Nicoletta Pucello
- zinc (Thu Jun 21 2001 - 01:39:03 PDT)
Noriyuki Yamaotsu
- Re: AMBER on Hitachi SR8000 (Thu Jun 07 2001 - 19:19:09 PDT)
Numan Oezguen
- Parameter for abasic nucleotide (Wed Jun 27 2001 - 19:48:58 PDT)
Olga Carvalho
- CARNAL (Thu Jun 21 2001 - 07:27:14 PDT)
Osvaldo A. Santos-Filho
- informations (Mon Jun 04 2001 - 13:31:11 PDT)
pascal bonnet
- Re: zinc (Thu Jun 21 2001 - 01:11:24 PDT)
Phil Cunningham
- AMBER (Tue Jun 19 2001 - 13:53:11 PDT)
PRADIPTA Bandyopadhyay
- Problem in MD! (Thu Jun 14 2001 - 10:16:59 PDT)
Prem Raj Joseph
- Energy calculation (Tue Jun 26 2001 - 09:34:38 PDT)
Richard W Dixon
- Re: sander_classic no mdcrd (Fri Jun 01 2001 - 08:41:10 PDT)
- Re: sander_classic no mdcrd (Fri Jun 01 2001 - 08:41:10 PDT)
samantha hughes
- Re: mm_pbsa (Thu Jun 14 2001 - 00:06:47 PDT)
Sanjeev B.S.
- Best Topolgy for Linux Cluster (Tue Jun 26 2001 - 05:17:51 PDT)
- Re: Wrong compilation artifacts on ES40s? (Sun Jun 24 2001 - 13:17:48 PDT)
- Wrong compilation artifacts on ES40s? (Sun Jun 24 2001 - 11:43:11 PDT)
- Re: parallel sander (Wed Jun 20 2001 - 10:39:23 PDT)
- Dual-processor performance. (Mon Jun 11 2001 - 23:45:24 PDT)
- benchmark on X-86 (Tue Jun 05 2001 - 01:23:37 PDT)
- Adding crystal water using tleap. (Sun Jun 03 2001 - 08:04:51 PDT)
Satyavani Vemparala
- water parameters+TIP3 water model (Mon Jun 18 2001 - 13:00:00 PDT)
schayg_at_puskin-a206.sote.hu
- Re: error msg in leap (Wed Jun 06 2001 - 12:27:49 PDT)
- Re: informations (Tue Jun 05 2001 - 08:39:03 PDT)
Shixiang Yan
- number of atoms for large system (Tue Jun 05 2001 - 12:36:50 PDT)
stefania_at_mail.unimo.it
- Charges for a 2-iodine-phenol (Mon Jun 25 2001 - 09:29:27 PDT)
Stephane
- Linux stability (Fri Jun 22 2001 - 15:05:29 PDT)
Thomas.Fox_at_bc.boehringer-ingelheim.com
- RE: CCl4 charge problem... (part II) (Wed Jun 27 2001 - 03:04:17 PDT)
- RE: CCl4 charge problem... (Wed Jun 27 2001 - 01:16:19 PDT)
Todd J. Minehardt
- dsp3 hybrid for P ? (Sun Jun 03 2001 - 12:47:41 PDT)
Troy Bothwell
- atom coordinates (Mon Jun 11 2001 - 15:47:59 PDT)
Wei Wang
- Re: LIE method (Wed Jun 06 2001 - 20:24:26 PDT)
Xiaolin Chuang
- iwrap & TIP3P model water (Fri Jun 22 2001 - 09:20:06 PDT)
- How to minimization of Average structure? (Sun Jun 03 2001 - 09:57:48 PDT)
Yong Duan
- Re: equilibrating water in sander (Wed Jun 20 2001 - 21:27:02 PDT)
Yuguang Mu
- Re: parallel sander (Thu Jun 21 2001 - 23:43:07 PDT)
- parallel sander (Wed Jun 20 2001 - 07:58:39 PDT)

Amber Archive Jun 2001 by author