How to minimization of Average structure?

From: Xiaolin Chuang <>
Date: Sun 03 Jun 2001 16:57:48 -0000

Dear Amber users,

I have just finished MD simulations of DNA using Amber 6 with standard
procedure. Now I have an average structure from trajectory file which the
average structrue was performed by ptraj module.

However, I don't know how to minimize this average structure. Could anyone
give me the input file of minimization? or please give me the suggestion.

Thank you very much in advance.

Xiaolin Chuang
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Received on Sun Jun 03 2001 - 09:57:48 PDT
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