Amber Archive Dec 2007 by thread
- AMBER: Minimization amber9 segmentation fault Francesco Pietra (Sat Dec 01 2007 - 07:46:23 PST)
- AMBER: mm_pbsa continue run Christopher Gaughan (Sun Dec 02 2007 - 10:46:42 PST)
- AMBER: I need some help in PTRAJ Vijay Manickam Achari (Sun Dec 02 2007 - 22:49:29 PST)
- Re: AMBER: angle between vectors Mag. rer. nat. Hannes Wallnöfer (Sun Dec 02 2007 - 23:55:51 PST)
- AMBER: sander and pmemd Nadia Vahdati (Mon Dec 03 2007 - 05:20:17 PST)
- Fwd: Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Mon Dec 03 2007 - 08:30:11 PST)
- AMBER: Re: divcon on AIX using xlf 10.1 Joachim Hein (Mon Dec 03 2007 - 08:43:19 PST)
- AMBER: Free energy for part of the system jialei (Mon Dec 03 2007 - 11:12:47 PST)
- AMBER: During the Sander process, does the pH of the solution change orr not Fenghui Fan (Mon Dec 03 2007 - 17:58:44 PST)
- AMBER: Restraintmask syntax Francesco Pietra (Tue Dec 04 2007 - 07:30:50 PST)
- AMBER: Solution Structure Determination Protocols - Simulated Annealing Seth Lilavivat (Tue Dec 04 2007 - 09:23:16 PST)
- AMBER: correlation time Tuncel, Aytug (Tue Dec 04 2007 - 10:22:55 PST)
- Re: AMBER: modifications to force field for Fe4S4 cubane David A. Case (Tue Dec 04 2007 - 10:57:39 PST)
- AMBER: POPS Lipid Bilayer: Full Parameter/Topology File Lalit Dubey (Tue Dec 04 2007 - 16:39:29 PST)
- AMBER: phosphorylation bosco (Tue Dec 04 2007 - 17:36:27 PST)
- AMBER: (no subject) Madjid Taghdir (Wed Dec 05 2007 - 01:18:11 PST)
- AMBER: nmode ntrun=2 JM Beames (Wed Dec 05 2007 - 02:03:24 PST)
- AMBER: leap restrainTorsion fatima.chami.durham.ac.uk (Wed Dec 05 2007 - 02:24:30 PST)
- AMBER: calcium and zinc parameter Madjid Taghdir (Wed Dec 05 2007 - 03:07:17 PST)
- AMBER: THF parameters Yves Boulard (Wed Dec 05 2007 - 02:21:04 PST)
- AMBER: Amber 9 - bugfix.40 fails Kevin Davies (Wed Dec 05 2007 - 09:27:27 PST)
- AMBER: Bulk water simulation with centre of mass position restrain Biman Jana (Wed Dec 05 2007 - 10:08:56 PST)
- Fwd: Re: AMBER: leap restrainTorsion fatima.chami.durham.ac.uk (Wed Dec 05 2007 - 10:45:24 PST)
- AMBER: How to apply psuedo-bonds for restraints Seth Lilavivat (Wed Dec 05 2007 - 11:28:37 PST)
- AMBER: amber on AMD opteron-250 servaas michielssens (Wed Dec 05 2007 - 12:10:22 PST)
- AMBER: MD_model Urszula Uciechowska (Wed Dec 05 2007 - 15:05:45 PST)
- AMBER: Making movies in VMD Lili Peng (Wed Dec 05 2007 - 16:57:08 PST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 00:44:09 PST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 00:45:35 PST)
- AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 Ye Mei (Thu Dec 06 2007 - 04:20:56 PST)
- AMBER: pmend vs sander.MPI Francesco Pietra (Thu Dec 06 2007 - 07:13:39 PST)
- Re: AMBER: Problem in running CARNAL Bill Ross (Thu Dec 06 2007 - 11:37:07 PST)
- Re: Re: AMBER: compilation error in SGI Altix 4700 with Intel Fortran10.1.008 and IMKL 10.0.1.014 Ye Mei (Thu Dec 06 2007 - 19:23:11 PST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 21:52:26 PST)
- AMBER: Troubles installing amber Margaret Doll (Fri Dec 07 2007 - 11:47:26 PST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 14:13:19 PST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 14:17:07 PST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT Bill Ross (Fri Dec 07 2007 - 14:20:49 PST)
- AMBER: running equilibration Boutheina Kerkeni (Fri Dec 07 2007 - 16:29:59 PST)
- Re: AMBER: running equilibration Bill Ross (Fri Dec 07 2007 - 17:11:02 PST)
- AMBER: Continuing an amber 8 simulation with amber 9 ming hui (Fri Dec 07 2007 - 23:03:55 PST)
- AMBER: protein_model Urszula Uciechowska (Sat Dec 08 2007 - 08:11:16 PST)
- AMBER: Backbone atoms Boutheina Kerkeni (Sat Dec 08 2007 - 14:42:20 PST)
- AMBER: website problems Sally Pias (Sat Dec 08 2007 - 21:06:16 PST)
- AMBER: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 02:11:30 PST)
- AMBER: Fwd: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 02:18:24 PST)
- AMBER: Troubling with installing Amber8 #NGUYEN CONG TRI# (Sun Dec 09 2007 - 04:06:18 PST)
- AMBER: some input problem Urszula Uciechowska (Sun Dec 09 2007 - 07:25:52 PST)
- AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 08:46:32 PST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine Hopkins, Robert (Sun Dec 09 2007 - 13:44:34 PST)
- AMBER: Ligand-Residue interaction tracking Evan Kelly (Mon Dec 10 2007 - 10:20:29 PST)
- AMBER: TI Approach - mass perturbation Ilyas Yildirim (Mon Dec 10 2007 - 10:20:49 PST)
- AMBER: implicit solvent simulations with calcium ion Akansha Saxena (Mon Dec 10 2007 - 13:19:01 PST)
- AMBER: tleap crashing Ranjib Dey (Tue Dec 11 2007 - 11:12:20 PST)
- AMBER: implicit solvent simulations WANG,YING (Tue Dec 11 2007 - 11:21:11 PST)
- AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Shuzhi Wang (Tue Dec 11 2007 - 13:07:25 PST)
- AMBER: equilibration Urszula Uciechowska (Wed Dec 12 2007 - 09:08:00 PST)
- AMBER: Free Energy Calculations Mike Wykes (Wed Dec 12 2007 - 10:08:20 PST)
- AMBER: New 2 the board Campbell, Patrick (Wed Dec 12 2007 - 13:12:30 PST)
- AMBER: make test.parallel not complete Prem Prakash Pathak (Thu Dec 13 2007 - 00:10:16 PST)
- AMBER: MMPBSA Syed Tarique Moin (Thu Dec 13 2007 - 04:34:21 PST)
- AMBER: protein-ligand binding affinity Francesco Pietra (Thu Dec 13 2007 - 06:00:17 PST)
- AMBER: help in QM/MM simulation Pankaj R. Daga (Thu Dec 13 2007 - 13:02:17 PST)
- AMBER: PMEMD internals !! Sampath Koppole (Fri Dec 14 2007 - 01:13:49 PST)
- AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 09:02:41 PST)
- AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sat Dec 15 2007 - 10:39:48 PST)
- RE: AMBER: Time step & non-bonded interactions updating Ross Walker (Sat Dec 15 2007 - 17:32:08 PST)
- RE: AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sun Dec 16 2007 - 08:36:46 PST)
- AMBER: pmemd: same rst, different result? Anselm Horn (Mon Dec 17 2007 - 01:54:20 PST)
- Re: AMBER: pmemd: same rst, different result? Benjamin Juhl (Mon Dec 17 2007 - 02:25:04 PST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Mon Dec 17 2007 - 07:29:15 PST)
- Re: AMBER: pmemd: same rst, different result? Anselm Horn (Tue Dec 18 2007 - 01:10:20 PST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 05:51:04 PST)
- Re: AMBER: pmemd: same rst, different result? David A. Case (Tue Dec 18 2007 - 07:46:56 PST)
- RE: AMBER: pmemd: same rst, different result? Yong Duan (Tue Dec 18 2007 - 09:47:31 PST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 18:26:34 PST)
- Re: AMBER: pmemd: same rst, different result? Thomas Cheatham (Tue Dec 18 2007 - 22:39:50 PST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Wed Dec 19 2007 - 06:12:56 PST)
- AMBER: MMTSB Toolset Urszula Uciechowska (Mon Dec 17 2007 - 04:19:34 PST)
- AMBER: amber9/mmtsb Francesco Pietra (Tue Dec 18 2007 - 02:21:31 PST)
- AMBER: Scripts for md analysis Francesco Pietra (Tue Dec 18 2007 - 03:05:24 PST)
- AMBER: PME and counter ions Lars Skjærven (Tue Dec 18 2007 - 08:04:12 PST)
- Re: AMBER: PME and counter ions Bill Ross (Tue Dec 18 2007 - 10:36:38 PST)
- AMBER: closest water molecules with 8 angstroms nag raj (Tue Dec 18 2007 - 22:52:45 PST)
- AMBER: Electron density profile Age.Skjevik.student.uib.no (Thu Dec 20 2007 - 04:13:56 PST)
- AMBER: Use of Counter Ions in binding energy calculations Jonathan Suever (Thu Dec 20 2007 - 10:42:15 PST)
- AMBER: Steered MD M kutty (Thu Dec 20 2007 - 22:03:29 PST)
- AMBER: No radius found for K+ (MM_PBSA) saurabh agrawal (Fri Dec 21 2007 - 06:45:01 PST)
- AMBER: About protein-ligand binding Francesco Pietra (Fri Dec 21 2007 - 06:52:00 PST)
- Re: AMBER: R.E.D.-III bug fixes snoze pa (Sat Dec 22 2007 - 11:14:44 PST)
- AMBER: RESP using antechamber snoze pa (Sat Dec 22 2007 - 11:21:07 PST)
- AMBER: installation of amber9 on suse linux 10.3 s lal badshah (Sun Dec 23 2007 - 21:47:21 PST)
- Re: AMBER: An enquiry about "Dynamics of ligand escape from the heme pocket of myoglobin (JACS, 1988, 110, 7690 David A. Case (Wed Dec 26 2007 - 09:52:20 PST)
- AMBER: installation s lal badshah (Wed Dec 26 2007 - 21:11:29 PST)
- AMBER: RESP charge fitting using antechamber Wei Chen (Sat Dec 29 2007 - 11:22:16 PST)
- AMBER: About RAMD Francesco Pietra (Mon Dec 31 2007 - 07:27:36 PST)
- AMBER: a question of ptraj WANG,YING (Mon Dec 31 2007 - 11:39:03 PST)
- Last message date: Wed Jan 02 2008 - 06:07:19 PST
- Archived on: Fri Dec 20 2024 - 05:53:41 PST
