Re: AMBER: calcium and zinc parameter

From: Mattia Mori - CERM <>
Date: Wed, 05 Dec 2007 12:15:08 +0100
In this paper you can find good Zinc parameters for Amber Force Field
Tuccinardi T, Martinelli A, Nuti E, Carelli P, Balzano F, Uccello-Barretta
G, Murphy G, Rossello A.
Bioorg. Med. Chem. 2006 14(12),

Or you can download

For Calcium ions you can find parameters in related papers or databases.



Madjid Taghdir ha scritto:
Dear amber users,
I am trying to simulate a protein with two heteroatom (Ca and Zn) that cordinated to its structure. how can I find the force constants and equilibrum bond , angle and so on.
Best regards

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Mattia Mori, PhD Student
CERM - Centro di Risonanze Magnetiche
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