Amber Archive Dec 2007: by author

#NGUYEN CONG TRI#
- RE: AMBER: Troubling with installing Amber8 (Thu Dec 13 2007 - 06:19:47 PST)
- AMBER: Troubling with installing Amber8 (Sun Dec 09 2007 - 04:06:18 PST)
Adrian Roitberg
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 10:33:23 PST)
- Re: AMBER: Minimization amber9 segmentation fault (Sat Dec 01 2007 - 11:44:16 PST)
- Re: AMBER: Minimization amber9 segmentation fault (Sat Dec 01 2007 - 08:17:15 PST)
Age.Skjevik.student.uib.no
- AMBER: Electron density profile (Thu Dec 20 2007 - 04:13:56 PST)
Akansha Saxena
- AMBER: implicit solvent simulations with calcium ion (Mon Dec 10 2007 - 13:19:01 PST)
Alessandro Nascimento
- Re: AMBER: closest water molecules with 8 angstroms (Wed Dec 19 2007 - 02:49:56 PST)
- Re: AMBER: Troubles installing amber (Fri Dec 07 2007 - 11:55:54 PST)
Andreas Svrcek-Seiler
- Re: AMBER: website problems (Sun Dec 09 2007 - 09:25:12 PST)
- Re: AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 (Thu Dec 06 2007 - 07:49:34 PST)
Andrew Purkiss-Trew
- RE: AMBER: Restraintmask syntax (Wed Dec 05 2007 - 02:39:08 PST)
Anselm Horn
- Re: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 01:10:20 PST)
- AMBER: pmemd: same rst, different result? (Mon Dec 17 2007 - 01:54:20 PST)
Barbault Florent
- Re: AMBER: RESP using antechamber (Sat Dec 22 2007 - 12:13:31 PST)
Benjamin Juhl
- Re: AMBER: pmemd: same rst, different result? (Mon Dec 17 2007 - 02:25:04 PST)
Bill Ross
- Re: AMBER: PME and counter ions (Thu Dec 20 2007 - 14:29:37 PST)
- Re: AMBER: PME and counter ions (Thu Dec 20 2007 - 14:25:15 PST)
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 12:14:19 PST)
- Re: AMBER: PME and counter ions (Tue Dec 18 2007 - 10:36:38 PST)
- Re: AMBER: running equilibration (Fri Dec 07 2007 - 17:11:02 PST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT (Fri Dec 07 2007 - 14:20:49 PST)
- Re: AMBER: Problem in running CARNAL (Fri Dec 07 2007 - 09:48:15 PST)
- Re: AMBER: Problem in running CARNAL (Thu Dec 06 2007 - 11:37:07 PST)
Biman Jana
- AMBER: Bulk water simulation with centre of mass position restrain (Wed Dec 05 2007 - 10:08:56 PST)
bosco
- AMBER: phosphorylation (Tue Dec 04 2007 - 17:36:27 PST)
Boutheina Kerkeni
- AMBER: Backbone atoms (Sat Dec 08 2007 - 14:42:20 PST)
- AMBER: running equilibration (Fri Dec 07 2007 - 16:29:59 PST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT (Fri Dec 07 2007 - 14:17:07 PST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT (Fri Dec 07 2007 - 14:13:19 PST)
- AMBER: FATAL: Atom .R<CYF 17>.A<N 1> does not have a type. (Wed Dec 05 2007 - 15:28:41 PST)
Campbell, Patrick
- AMBER: New 2 the board (Wed Dec 12 2007 - 13:12:30 PST)
Carlos Simmerling
- Re: AMBER: MMTSB Toolset (Mon Dec 17 2007 - 04:26:27 PST)
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 13:11:37 PST)
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 10:58:36 PST)
Chris Moth
- Re: AMBER: a question of ptraj (Mon Dec 31 2007 - 12:38:21 PST)
- AMBER: PME and counter ions (Wed Dec 19 2007 - 16:21:46 PST)
- Re: AMBER: I need some help in PTRAJ (Mon Dec 03 2007 - 17:29:21 PST)
Christopher Gaughan
- AMBER: mm_pbsa continue run (Sun Dec 02 2007 - 10:46:42 PST)
Christopher Jones
- RE: AMBER: amber on AMD opteron-250 (Tue Dec 11 2007 - 14:08:31 PST)
David A. Case
- Re: AMBER: RESP charge fitting using antechamber (Sat Dec 29 2007 - 18:05:25 PST)
- Re: AMBER: An enquiry about "Dynamics of ligand escape from the heme pocket of myoglobin (JACS, 1988, 110, 7690 (Wed Dec 26 2007 - 09:52:20 PST)
- Re: AMBER: installation of amber9 on suse linux 10.3 (Sun Dec 23 2007 - 22:03:38 PST)
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 18:41:30 PST)
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 17:01:00 PST)
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 12:01:55 PST)
- Re: AMBER: amber9/mmtsb (Wed Dec 19 2007 - 08:19:47 PST)
- Re: AMBER: amber9/mmtsb (Tue Dec 18 2007 - 07:59:11 PST)
- Re: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 07:46:56 PST)
- Re: AMBER: xleap loading files (Fri Dec 14 2007 - 22:26:13 PST)
- Re: AMBER: nmode ntrun=2 (Fri Dec 14 2007 - 10:27:44 PST)
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 09:17:09 PST)
- Re: AMBER: Troubling with installing Amber8 (Fri Dec 14 2007 - 08:39:58 PST)
- Re: AMBER: New 2 the board (Wed Dec 12 2007 - 16:03:46 PST)
- Re: AMBER: tleap crashing (Tue Dec 11 2007 - 15:04:25 PST)
- Re: AMBER: TI Approach - mass perturbation (Mon Dec 10 2007 - 23:13:08 PST)
- Re: AMBER: Troubling with installing Amber8 (Sun Dec 09 2007 - 09:18:29 PST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 09:13:00 PST)
- Re: AMBER: some input problem (Sun Dec 09 2007 - 09:09:51 PST)
- Re: AMBER: website problems (Sun Dec 09 2007 - 09:03:47 PST)
- Re: AMBER: Backbone atoms (Sat Dec 08 2007 - 14:58:30 PST)
- Re: AMBER: Continuing an amber 8 simulation with amber 9 (Sat Dec 08 2007 - 10:40:09 PST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT (Fri Dec 07 2007 - 17:24:30 PST)
- Re: AMBER: Troubles installing amber (Fri Dec 07 2007 - 14:15:36 PST)
- Re: AMBER: Surface (Thu Dec 06 2007 - 13:34:04 PST)
- Re: AMBER: correlation time (Thu Dec 06 2007 - 09:09:07 PST)
- Re: AMBER: nmode ntrun=2 (Thu Dec 06 2007 - 09:06:01 PST)
- Re: AMBER: How to apply psuedo-bonds for restraints (Thu Dec 06 2007 - 08:56:59 PST)
- Re: Fwd: Re: AMBER: leap restrainTorsion (Wed Dec 05 2007 - 18:15:36 PST)
- Re: AMBER: How to apply psuedo-bonds for restraints (Wed Dec 05 2007 - 18:16:43 PST)
- Re: AMBER: FATAL: Atom .R<CYF 17>.A<N 1> does not have a type. (Wed Dec 05 2007 - 16:41:32 PST)
- Re: AMBER: nmode ntrun=2 (Wed Dec 05 2007 - 09:58:34 PST)
- Re: AMBER: THF parameters (Wed Dec 05 2007 - 09:56:18 PST)
- Re: AMBER: leap restrainTorsion (Wed Dec 05 2007 - 08:50:12 PST)
- Re: AMBER: POPS Lipid Bilayer: Full Parameter/Topology File (Tue Dec 04 2007 - 17:11:53 PST)
- Re: AMBER: modifications to force field for Fe4S4 cubane (Tue Dec 04 2007 - 10:57:39 PST)
- Re: AMBER: correlation time (Tue Dec 04 2007 - 10:40:20 PST)
- Re: AMBER: Free energy for part of the system (Tue Dec 04 2007 - 10:37:16 PST)
- Re: AMBER: Free energy for part of the system (Mon Dec 03 2007 - 18:35:50 PST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault (Mon Dec 03 2007 - 09:08:48 PST)
David LeBard
- Re: AMBER: amber on AMD opteron-250 (Wed Dec 05 2007 - 12:29:22 PST)
David Mobley
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 15:04:50 PST)
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 11:18:21 PST)
- Re: AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 10:47:27 PST)
- AMBER: replica exchange out files continually overwritten (Fri Dec 14 2007 - 09:02:41 PST)
Eddie Men
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 13:40:24 PST)
Evan Kelly
- AMBER: Ligand-Residue interaction tracking (Mon Dec 10 2007 - 10:20:29 PST)
fatima.chami.durham.ac.uk
- Fwd: Re: AMBER: leap restrainTorsion (Wed Dec 05 2007 - 10:45:24 PST)
- AMBER: leap restrainTorsion (Wed Dec 05 2007 - 02:24:30 PST)
Fenghui Fan
- AMBER: During the Sander process, does the pH of the solution change orr not (Mon Dec 03 2007 - 17:58:44 PST)
Francesco Pietra
- AMBER: About RAMD (Mon Dec 31 2007 - 07:27:36 PST)
- Re: AMBER: RESP charge fitting using antechamber (Sun Dec 30 2007 - 23:19:42 PST)
- AMBER: About protein-ligand binding (Fri Dec 21 2007 - 06:52:00 PST)
- Re: AMBER: amber9/mmtsb (Tue Dec 18 2007 - 09:15:55 PST)
- AMBER: Scripts for md analysis (Tue Dec 18 2007 - 03:05:24 PST)
- AMBER: amber9/mmtsb (Tue Dec 18 2007 - 02:21:31 PST)
- RE: AMBER: Time step & non-bonded interactions updating (Sun Dec 16 2007 - 08:36:46 PST)
- AMBER: Time step & non-bonded interactions updating (Sat Dec 15 2007 - 10:39:48 PST)
- AMBER: protein-ligand binding affinity (Thu Dec 13 2007 - 06:00:17 PST)
- Re: AMBER: pmend vs sander.MPI (Sun Dec 09 2007 - 09:35:48 PST)
- AMBER: Fwd: ptraj with protein-ligand (Sun Dec 09 2007 - 02:18:24 PST)
- AMBER: ptraj with protein-ligand (Sun Dec 09 2007 - 02:11:30 PST)
- AMBER: pmend vs sander.MPI (Thu Dec 06 2007 - 07:13:39 PST)
- RE: AMBER: Restraintmask syntax (Wed Dec 05 2007 - 10:00:49 PST)
- RE: AMBER: Restraintmask syntax (Tue Dec 04 2007 - 09:44:01 PST)
- AMBER: Restraintmask syntax (Tue Dec 04 2007 - 07:30:50 PST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault (Mon Dec 03 2007 - 14:18:01 PST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault (Mon Dec 03 2007 - 13:45:14 PST)
- Fwd: Re: AMBER: Minimization amber9 segmentation fault (Mon Dec 03 2007 - 08:30:11 PST)
- Re: AMBER: Minimization amber9 segmentation fault (Sun Dec 02 2007 - 01:51:42 PST)
- Re: AMBER: Minimization amber9 segmentation fault (Sat Dec 01 2007 - 10:48:01 PST)
- AMBER: Minimization amber9 segmentation fault (Sat Dec 01 2007 - 07:46:23 PST)
FyD
- Re: AMBER: RESP charge fitting using antechamber (Mon Dec 31 2007 - 07:40:11 PST)
- Re: AMBER: RESP charge fitting using antechamber (Mon Dec 31 2007 - 06:06:34 PST)
- Re: AMBER: RESP charge fitting using antechamber (Sun Dec 30 2007 - 06:54:59 PST)
- Re: AMBER: xleap loading files (Sat Dec 15 2007 - 05:04:46 PST)
- Re: AMBER: phosphorylation (Thu Dec 06 2007 - 12:07:57 PST)
- Re: AMBER: THF parameters (Wed Dec 05 2007 - 12:42:29 PST)
- Re: AMBER: THF parameters (Wed Dec 05 2007 - 06:32:27 PST)
Gustavo Seabra
- Re: AMBER: help in QM/MM simulation (Wed Dec 19 2007 - 06:42:19 PST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine (Tue Dec 11 2007 - 16:23:49 PST)
Holger Gohlke
- Re: AMBER: Amber 9 - bugfix.40 fails (Wed Dec 05 2007 - 09:56:23 PST)
Hopkins, Robert
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine (Tue Dec 11 2007 - 15:50:17 PST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine (Sun Dec 09 2007 - 13:44:34 PST)
Ilya Chorny
- Re: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 18:42:45 PST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 10:12:57 PST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 10:11:52 PST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 09:22:17 PST)
- AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 08:46:32 PST)
Ilyas Yildirim
- Re: AMBER: TI Approach - mass perturbation (Mon Dec 10 2007 - 23:47:52 PST)
- AMBER: TI Approach - mass perturbation (Mon Dec 10 2007 - 10:20:49 PST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 13:56:09 PST)
- Re: AMBER: MD_model (Wed Dec 05 2007 - 15:54:50 PST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault (Mon Dec 03 2007 - 14:42:54 PST)
jialei
- RE: AMBER: Free energy for part of the system (Tue Dec 04 2007 - 17:10:18 PST)
- RE: AMBER: Free energy for part of the system (Tue Dec 04 2007 - 10:21:03 PST)
- AMBER: Free energy for part of the system (Mon Dec 03 2007 - 11:12:47 PST)
JM Beames
- Re: AMBER: nmode ntrun=2 (Thu Dec 13 2007 - 07:29:54 PST)
- Re: AMBER: nmode ntrun=2 (Thu Dec 06 2007 - 03:48:43 PST)
- AMBER: nmode ntrun=2 (Wed Dec 05 2007 - 02:03:24 PST)
Joachim Hein
- AMBER: Re: divcon on AIX using xlf 10.1 (Mon Dec 03 2007 - 08:43:19 PST)
Jonathan Suever
- AMBER: Use of Counter Ions in binding energy calculations (Thu Dec 20 2007 - 10:42:15 PST)
Kevin Davies
- AMBER: Amber 9 - bugfix.40 fails (Wed Dec 05 2007 - 09:27:27 PST)
Lalit Dubey
- Re: AMBER: POPS Lipid Bilayer: Full Parameter/Topology File (Thu Dec 06 2007 - 22:45:59 PST)
- AMBER: POPS Lipid Bilayer: Full Parameter/Topology File (Tue Dec 04 2007 - 16:39:29 PST)
Lars Skjærven
- Re: AMBER: PME and counter ions (Thu Dec 20 2007 - 07:12:53 PST)
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 17:52:11 PST)
- Re: AMBER: PME and counter ions (Tue Dec 18 2007 - 18:34:26 PST)
- AMBER: PME and counter ions (Tue Dec 18 2007 - 08:04:12 PST)
Lili Peng
- AMBER: Making movies in VMD (Wed Dec 05 2007 - 16:57:08 PST)
liu junjun
- Re: AMBER: implicit solvent simulations (Tue Dec 11 2007 - 19:49:57 PST)
M kutty
- RE: AMBER: Steered MD (Sun Dec 23 2007 - 21:04:41 PST)
- AMBER: Steered MD (Thu Dec 20 2007 - 22:03:29 PST)
M. L. Dodson
- Re: AMBER: Steered MD (Fri Dec 21 2007 - 08:00:58 PST)
- Re: AMBER: Steered MD (Fri Dec 21 2007 - 07:52:30 PST)
Madjid Taghdir
- Re: AMBER: calcium and zinc parameter (Mon Dec 10 2007 - 23:21:37 PST)
- AMBER: calcium and zinc parameter (Wed Dec 05 2007 - 03:07:17 PST)
- AMBER: (no subject) (Wed Dec 05 2007 - 01:18:11 PST)
Mag. rer. nat. Hannes Wallnöfer
- Re: AMBER: angle between vectors (Sun Dec 02 2007 - 23:55:51 PST)
Margaret Doll
- Re: AMBER: Troubles installing amber (Fri Dec 07 2007 - 14:22:22 PST)
- Re: AMBER: Troubles installing amber (Fri Dec 07 2007 - 13:36:36 PST)
- AMBER: Troubles installing amber (Fri Dec 07 2007 - 11:47:26 PST)
Mark Williamson
- Re: AMBER: installation (Sat Dec 29 2007 - 09:23:15 PST)
Mattia Mori - CERM
- Re: AMBER: calcium and zinc parameter (Tue Dec 11 2007 - 05:07:31 PST)
- Re: AMBER: calcium and zinc parameter (Thu Dec 06 2007 - 05:21:10 PST)
- Re: AMBER: calcium and zinc parameter (Wed Dec 05 2007 - 03:15:08 PST)
Mike Wykes
- AMBER: Free Energy Calculations (Wed Dec 12 2007 - 10:08:20 PST)
ming hui
- AMBER: Continuing an amber 8 simulation with amber 9 (Fri Dec 07 2007 - 23:03:55 PST)
Nadia Vahdati
- AMBER: sander and pmemd (Mon Dec 03 2007 - 05:20:17 PST)
nag raj
- AMBER: closest water molecules with 8 angstroms (Tue Dec 18 2007 - 22:52:45 PST)
Pablo Englebienne
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 11:05:30 PST)
Pankaj R. Daga
- AMBER: help in QM/MM simulation (Thu Dec 13 2007 - 13:02:17 PST)
Piotr Cieplak
- Re: AMBER: THF parameters (Wed Dec 05 2007 - 11:33:42 PST)
Prem
- Re: AMBER: angle between vectors (Tue Dec 04 2007 - 13:59:29 PST)
Prem Prakash Pathak
- Re: AMBER: make test.parallel not complete (Thu Dec 20 2007 - 01:59:03 PST)
- AMBER: make test.parallel not complete (Thu Dec 13 2007 - 00:10:16 PST)
Ranjib Dey
- Re: AMBER: tleap crashing (Tue Dec 11 2007 - 23:04:55 PST)
- AMBER: tleap crashing (Tue Dec 11 2007 - 11:12:20 PST)
rdauria.uci.edu
- Re: AMBER: Making movies in VMD (Wed Dec 05 2007 - 21:20:12 PST)
Robert Duke
- Re: AMBER: pmemd: same rst, different result? (Wed Dec 19 2007 - 06:12:56 PST)
- Re: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 18:26:34 PST)
- Re: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 05:51:04 PST)
- Re: AMBER: pmemd: same rst, different result? (Mon Dec 17 2007 - 07:29:15 PST)
- Re: AMBER: PMEMD internals !! (Fri Dec 14 2007 - 05:41:43 PST)
- Re: AMBER: pmend vs sander.MPI (Thu Dec 06 2007 - 07:18:20 PST)
- Re: AMBER: PMEMD compilation problems !! (Thu Dec 06 2007 - 07:07:21 PST)
- Re: AMBER: PMEMD compilation problems !! (Thu Dec 06 2007 - 06:56:04 PST)
- Re: AMBER: amber on AMD opteron-250 (Wed Dec 05 2007 - 13:31:28 PST)
- Re: AMBER: amber on AMD opteron-250 (Wed Dec 05 2007 - 12:35:04 PST)
- Re: AMBER: sander and pmemd (Mon Dec 03 2007 - 06:19:24 PST)
Ross Walker
- RE: AMBER: installation of amber9 on suse linux 10.3 (Wed Dec 26 2007 - 22:18:51 PST)
- RE: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" (Mon Dec 17 2007 - 15:20:23 PST)
- RE: AMBER: Time step & non-bonded interactions updating (Sat Dec 15 2007 - 17:32:08 PST)
- RE: AMBER: make test.parallel not complete (Thu Dec 13 2007 - 06:19:42 PST)
- RE: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" (Tue Dec 11 2007 - 13:32:43 PST)
- RE: AMBER: amber on AMD opteron-250 (Tue Dec 11 2007 - 13:20:11 PST)
- RE: AMBER: amber on AMD opteron-250 (Tue Dec 11 2007 - 07:52:07 PST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 11:54:44 PST)
- RE: AMBER: website problems (Sun Dec 09 2007 - 11:06:00 PST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 10:57:55 PST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error (Sun Dec 09 2007 - 10:01:57 PST)
- RE: AMBER: website problems (Sun Dec 09 2007 - 09:52:42 PST)
- RE: AMBER: running equilibration (Fri Dec 07 2007 - 17:00:15 PST)
s lal badshah
- AMBER: installation (Wed Dec 26 2007 - 21:11:29 PST)
- Re: AMBER: installation of amber9 on suse linux 10.3 (Wed Dec 26 2007 - 21:02:24 PST)
- AMBER: installation of amber9 on suse linux 10.3 (Sun Dec 23 2007 - 21:47:21 PST)
Sally Pias
- Re: AMBER: website problems (Sun Dec 09 2007 - 10:45:51 PST)
- AMBER: website problems (Sat Dec 08 2007 - 21:06:16 PST)
Sampath Koppole
- AMBER: PMEMD internals !! (Fri Dec 14 2007 - 01:13:49 PST)
- AMBER: PMEMD compilation problems !! (Thu Dec 06 2007 - 06:42:06 PST)
saurabh agrawal
- AMBER: No radius found for K+ (MM_PBSA) (Fri Dec 21 2007 - 06:45:01 PST)
servaas michielssens
- RE: AMBER: amber on AMD opteron-250 (Tue Dec 11 2007 - 12:27:20 PST)
- Re: AMBER: amber on AMD opteron-250 (Tue Dec 11 2007 - 01:35:08 PST)
- AMBER: amber on AMD opteron-250 (Wed Dec 05 2007 - 12:10:22 PST)
Seth Lilavivat
- Re: AMBER: How to apply psuedo-bonds for restraints (Thu Dec 06 2007 - 08:08:55 PST)
- AMBER: How to apply psuedo-bonds for restraints (Wed Dec 05 2007 - 11:28:37 PST)
- AMBER: Solution Structure Determination Protocols - Simulated Annealing (Tue Dec 04 2007 - 09:23:16 PST)
Shuzhi Wang
- Re: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" (Mon Dec 17 2007 - 14:49:57 PST)
- AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" (Tue Dec 11 2007 - 13:07:25 PST)
snoze pa
- AMBER: RESP using antechamber (Sat Dec 22 2007 - 11:21:07 PST)
- Re: AMBER: R.E.D.-III bug fixes (Sat Dec 22 2007 - 11:14:44 PST)
steinbrt.scripps.edu
- Re: AMBER: protein_model (Sat Dec 08 2007 - 10:51:35 PST)
Steve Spronk
- RE: AMBER: implicit solvent simulations (Wed Dec 12 2007 - 05:00:01 PST)
- RE: AMBER: Restraintmask syntax (Tue Dec 04 2007 - 08:49:36 PST)
Syed Tarique Moin
- AMBER: MMPBSA (Thu Dec 13 2007 - 04:34:21 PST)
Taufik Al-Sarraj
- AMBER: xleap loading files (Fri Dec 14 2007 - 14:20:08 PST)
- AMBER: loading a crystal PDB file (Wed Dec 12 2007 - 17:33:36 PST)
- AMBER: AMBER7 Si atom type (Wed Dec 12 2007 - 09:30:49 PST)
- AMBER: Surface (Thu Dec 06 2007 - 11:11:21 PST)
- Re: AMBER: calcium and zinc parameter (Wed Dec 05 2007 - 10:43:45 PST)
Thomas Cheatham
- Re: AMBER: PME and counter ions (Wed Dec 19 2007 - 22:05:41 PST)
- Re: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 22:39:50 PST)
Thomas Cheatham III
- Re: AMBER: PME and counter ions (Fri Dec 21 2007 - 14:19:03 PST)
- Re: AMBER: No radius found for K+ (MM_PBSA) (Fri Dec 21 2007 - 10:53:55 PST)
Thomas Steinbrecher
- Re: AMBER: Free Energy Calculations (Wed Dec 12 2007 - 11:19:55 PST)
- Re: AMBER: MD_model (Wed Dec 05 2007 - 15:26:04 PST)
Tuncel, Aytug
- RE: AMBER: correlation time (Thu Dec 06 2007 - 01:44:29 PST)
- AMBER: correlation time (Tue Dec 04 2007 - 10:22:55 PST)
Urszula Uciechowska
- AMBER: MMTSB Toolset (Mon Dec 17 2007 - 04:19:34 PST)
- AMBER: equilibration (Wed Dec 12 2007 - 09:08:00 PST)
- AMBER: some input problem (Sun Dec 09 2007 - 07:25:52 PST)
- AMBER: protein_model (Sat Dec 08 2007 - 08:11:16 PST)
- AMBER: MD_model (Wed Dec 05 2007 - 15:05:45 PST)
Vijay Manickam Achari
- AMBER: Problem in running CARNAL (Thu Dec 06 2007 - 21:52:26 PST)
- AMBER: Problem in running CARNAL (Thu Dec 06 2007 - 00:45:35 PST)
- AMBER: Problem in running CARNAL (Thu Dec 06 2007 - 00:44:09 PST)
- AMBER: I need some help in PTRAJ (Sun Dec 02 2007 - 22:49:29 PST)
Vijay Singh
- Re: AMBER: Making movies in VMD (Wed Dec 05 2007 - 17:25:26 PST)
WANG,YING
- AMBER: a question of ptraj (Mon Dec 31 2007 - 11:39:03 PST)
- Re: AMBER: implicit solvent simulations (Tue Dec 11 2007 - 20:00:59 PST)
- AMBER: implicit solvent simulations (Tue Dec 11 2007 - 11:21:11 PST)
Wei Chen
- AMBER: RESP charge fitting using antechamber (Sat Dec 29 2007 - 11:22:16 PST)
Wei Zhang
- Re: AMBER: Troubles installing amber (Fri Dec 07 2007 - 11:54:47 PST)
Ye Mei
- Re: Re: AMBER: compilation error in SGI Altix 4700 with Intel Fortran10.1.008 and IMKL 10.0.1.014 (Thu Dec 06 2007 - 19:23:11 PST)
- AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 (Thu Dec 06 2007 - 04:20:56 PST)
Yong Duan
- RE: AMBER: pmemd: same rst, different result? (Tue Dec 18 2007 - 09:47:31 PST)
Yves Boulard
- AMBER: THF parameters (Wed Dec 05 2007 - 02:21:04 PST)

Amber Archive Dec 2007 by author