Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine

From: Gustavo Seabra <>
Date: Tue, 11 Dec 2007 19:23:49 -0500

On Dec 11, 2007 6:50 PM, Hopkins, Robert <> wrote:
> Dear Dr. Case and Amber Users,
> Here's one final note for this thread. I just reinstalled Amber9
> very successfully and also found that the patch command using the
> the intact bugfix.all file worked beautifully, with one minor
> exception: the next-to-last bugfix in the file -- for:
> src/sander/runmd.f *** 814, 820 *** --- 814, 825 ---
> apparently failed because the 'add line' flags (+) for the proposed
> changes seem to be missing. Thanks again for your comments.

That's from bugfix.40 (actually the last bugfix). This issue has been
reported before, and is being taken care of by the author of the
bugfix (Holger Gohlke). Meanwhile, remove bugfix.40 from bugfix.all
(anything below the "********>Bugfix 40:" line) and all should work

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Dec 12 2007 - 06:07:36 PST
Custom Search