Dear sir,
I have sent my CARNAL input file here.
You can have a look on this.
For your information I am using AMBER 7 which contains
CARNAL. Thank you sir.
my CARNAL script is as below:
FILES_IN
PARM p1 betaM_lyo.top;
STREAM s1 betaM_lyo_md02_0100.mdcrd.gz;
FILES_OUT
HBOND h1 xhb TABLE LIST;
HBOND h2 xhb TABLE LIST;
HBOND h3 xhb TABLE LIST;
HBOND h4 xhb TABLE LIST;
HBOND h5 xhb TABLE LIST;
HBOND h6 xhb TABLE LIST;
HBOND h7 xhb TABLE LIST;
HBOND h8 xhb TABLE LIST;
HBOND h9 xhb TABLE LIST;
HBOND h10 xhb TABLE LIST;
HBOND h11 xhb TABLE LIST;
HBOND h12 xhb TABLE LIST;
HBOND h13 xhb TABLE LIST;
HBOND h14 xhb TABLE LIST;
HBOND h15 xhb TABLE LIST;
HBOND h16 xhb TABLE LIST;
HBOND h17 xhb TABLE LIST;
HBOND h18 xhb TABLE LIST;
HBOND h19 xhb TABLE LIST;
HBOND h20 xhb TABLE LIST;
HBOND h21 xhb TABLE LIST;
HBOND h22 xhb TABLE LIST;
HBOND h23 xhb TABLE LIST;
HBOND h24 xhb TABLE LIST;
HBOND h25 xhb TABLE LIST;
HBOND h26 xhb TABLE LIST;
HBOND h27 xhb TABLE LIST;
HBOND h28 xhb TABLE LIST;
HBOND h29 xhb TABLE LIST;
HBOND h30 xhb TABLE LIST;
HBOND h31 xhb TABLE LIST;
HBOND h32 xhb TABLE LIST;
HBOND h33 xhb TABLE LIST;
HBOND h34 xhb TABLE LIST;
HBOND h35 xhb TABLE LIST;
HBOND h36 xhb TABLE LIST;
HBOND h37 xhb TABLE LIST;
HBOND h38 xhb TABLE LIST;
HBOND h39 xhb TABLE LIST;
HBOND h40 xhb TABLE LIST;
HBOND h41 xhb TABLE LIST;
HBOND h42 xhb TABLE LIST;
HBOND h43 xhb TABLE LIST;
HBOND h44 xhb TABLE LIST;
HBOND h45 xhb TABLE LIST;
HBOND h46 xhb TABLE LIST;
HBOND h47 xhb TABLE LIST;
HBOND h48 xhb TABLE LIST;
HBOND h49 xhb TABLE LIST;
HBOND h50 xhb TABLE LIST;
HBOND h51 xhb TABLE LIST;
HBOND h52 xhb TABLE LIST;
HBOND h53 xhb TABLE LIST;
HBOND h54 xhb TABLE LIST;
HBOND h55 xhb TABLE LIST;
HBOND h56 xhb TABLE LIST;
HBOND h57 xhb TABLE LIST;
HBOND h58 xhb TABLE LIST;
HBOND h59 xhb TABLE LIST;
HBOND h60 xhb TABLE LIST;
HBOND h61 xhb TABLE LIST;
HBOND h62 xhb TABLE LIST;
HBOND h63 xhb TABLE LIST;
HBOND h64 xhb TABLE LIST;
HBOND h65 xhb TABLE LIST;
HBOND h66 xhb TABLE LIST;
HBOND h67 xhb TABLE LIST;
HBOND h68 xhb TABLE LIST;
HBOND h69 xhb TABLE LIST;
HBOND h70 xhb TABLE LIST;
DECLARE
GROUP g1 ((ATOM NAME O12) & ( RES 1));
GROUP g2 ((ATOM NAME O11) & ( RES 1));
GROUP g3 ((ATOM NAME O13) & ( RES 1));
GROUP g4 ((ATOM NAME O15) & ( RES 1));
GROUP g5 ((ATOM NAME O16) & ( RES 1));
GROUP g6 ((ATOM NAME O14) & ( RES 1));
GROUP g7 ((ATOM NAME O22) & ( RES 1));
GROUP g8 ((ATOM NAME O23) & ( RES 1));
GROUP g9 ((ATOM NAME O24) & ( RES 1));
GROUP g10 ((ATOM NAME O25) & ( RES 1));
GROUP g11 ((ATOM NAME O26) & ( RES 1));
GROUP g12 ((ATOM NAME O13) & ( RES 1));
GROUP g13 ((ATOM NAME O11) & ( RES 1));
GROUP g14 ((ATOM NAME O12) & ( RES 1));
GROUP g15 ((ATOM NAME O15) & ( RES 1));
GROUP g16 ((ATOM NAME O16) & ( RES 1));
GROUP g17 ((ATOM NAME O14) & ( RES 1));
GROUP g18 ((ATOM NAME O22) & ( RES 1));
GROUP g19 ((ATOM NAME O23) & ( RES 1));
GROUP g20 ((ATOM NAME O24) & ( RES 1));
GROUP g21 ((ATOM NAME O25) & ( RES 1));
GROUP g22 ((ATOM NAME O26) & ( RES 1));
GROUP g23 ((ATOM NAME O16) & ( RES 1));
GROUP g24 ((ATOM NAME O11) & ( RES 1));
GROUP g25 ((ATOM NAME O12) & ( RES 1));
GROUP g26 ((ATOM NAME O13) & ( RES 1));
GROUP g27 ((ATOM NAME O15) & ( RES 1));
GROUP g28 ((ATOM NAME O14) & ( RES 1));
GROUP g29 ((ATOM NAME O22) & ( RES 1));
GROUP g30 ((ATOM NAME O23) & ( RES 1));
GROUP g31 ((ATOM NAME O24) & ( RES 1));
GROUP g32 ((ATOM NAME O25) & ( RES 1));
GROUP g33 ((ATOM NAME O26) & ( RES 1));
GROUP g34 ((ATOM NAME O22) & ( RES 1));
GROUP g35 ((ATOM NAME O11) & ( RES 1));
GROUP g36 ((ATOM NAME O12) & ( RES 1));
GROUP g37 ((ATOM NAME O13) & ( RES 1));
GROUP g38 ((ATOM NAME O15) & ( RES 1));
GROUP g39 ((ATOM NAME O16) & ( RES 1));
GROUP g40 ((ATOM NAME O14) & ( RES 1));
GROUP g41 ((ATOM NAME O23) & ( RES 1));
GROUP g42 ((ATOM NAME O24) & ( RES 1));
GROUP g43 ((ATOM NAME O25) & ( RES 1));
GROUP g44 ((ATOM NAME O26) & ( RES 1));
GROUP g45 ((ATOM NAME O23) & ( RES 1));
GROUP g46 ((ATOM NAME O11) & ( RES 1));
GROUP g47 ((ATOM NAME O12) & ( RES 1));
GROUP g48 ((ATOM NAME O13) & ( RES 1));
GROUP g49 ((ATOM NAME O15) & ( RES 1));
GROUP g50 ((ATOM NAME O16) & ( RES 1));
GROUP g51 ((ATOM NAME O14) & ( RES 1));
GROUP g52 ((ATOM NAME O22) & ( RES 1));
GROUP g53 ((ATOM NAME O24) & ( RES 1));
GROUP g54 ((ATOM NAME O25) & ( RES 1));
GROUP g55 ((ATOM NAME O26) & ( RES 1));
GROUP g56 ((ATOM NAME O24) & ( RES 1));
GROUP g57 ((ATOM NAME O11) & ( RES 1));
GROUP g58 ((ATOM NAME O12) & ( RES 1));
GROUP g59 ((ATOM NAME O13) & ( RES 1));
GROUP g60 ((ATOM NAME O15) & ( RES 1));
GROUP g61 ((ATOM NAME O16) & ( RES 1));
GROUP g62 ((ATOM NAME O14) & ( RES 1));
GROUP g63 ((ATOM NAME O22) & ( RES 1));
GROUP g64 ((ATOM NAME O23) & ( RES 1));
GROUP g65 ((ATOM NAME O25) & ( RES 1));
GROUP g66 ((ATOM NAME O26) & ( RES 1));
GROUP g67 ((ATOM NAME O26) & ( RES 1));
GROUP g68 ((ATOM NAME O11) & ( RES 1));
GROUP g69 ((ATOM NAME O12) & ( RES 1));
GROUP g70 ((ATOM NAME O13) & ( RES 1));
GROUP g71 ((ATOM NAME O15) & ( RES 1));
GROUP g72 ((ATOM NAME O16) & ( RES 1));
GROUP g73 ((ATOM NAME O14) & ( RES 1));
GROUP g74 ((ATOM NAME O22) & ( RES 1));
GROUP g75 ((ATOM NAME O23) & ( RES 1));
GROUP g76 ((ATOM NAME O24) & ( RES 1));
GROUP g77 ((ATOM NAME O25) & ( RES 1));
OUTPUT
HBOND h1 DONOR g1 ACCEPTER g2 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h2 DONOR g1 ACCEPTER g3 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h3 DONOR g1 ACCEPTER g4 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h4 DONOR g1 ACCEPTER g5 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h5 DONOR g1 ACCEPTER g6 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h6 DONOR g1 ACCEPTER g7 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h7 DONOR g1 ACCEPTER g8 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h8 DONOR g1 ACCEPTER g9 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h9 DONOR g1 ACCEPTER g10 DISTANCE 4.0 ANGLE
60.0 STATS;
HBOND h10 DONOR g1 ACCEPTER g11 DISTANCE 4.0
ANGLE 60.0 STATS;
Thank you SIR.
Vijay
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Received on Sun Dec 09 2007 - 06:07:36 PST
