Re: AMBER: amber9/mmtsb

From: David A. Case <>
Date: Tue, 18 Dec 2007 07:59:11 -0800

On Tue, Dec 18, 2007, Francesco Pietra wrote:

> On looking for the way to carry out cluster analysis (of the type of
> tutorial B3) with Amber 9, I was unable to find documentation for MMTSB in
> combination with Amber 9. Amber proposes a patch for Amber 8, while the
> MMTSB web site only refers to CHARMM. Should Amber 9 be recompiled with

I don't understand: the clustering in mmtsb just uses pdb files as inputs.
It shouldn't matter where the pdb files come from: amber 8 or amber 9, or

What happened when you did your clustering using Amber 9?


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Received on Wed Dec 19 2007 - 06:07:30 PST
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