Re: AMBER: Backbone atoms

From: David A. Case <>
Date: Sat, 8 Dec 2007 14:58:30 -0800

On Sat, Dec 08, 2007, Boutheina Kerkeni wrote:
> I have a question concerning the backbone atoms of an entire protein
> from a pdb file: I need to specify these in order
> to compute RMSd using ptraj. (....?) I have 796 Residues.

You can use the ambmask program to experiment and figure out things like this
on your own. Further, one of the examples in the "ambmask" section of the
Users' Manual seems to be exactly what you are asking for.


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Received on Sun Dec 09 2007 - 06:07:54 PST
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