Amber Archive Oct 2005: by author

Alec M. Resnick
- AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 09:29:43 PDT)
Andreas Svrcek-Seiler
- Re: AMBER: problems installing amber 7 on a RH Linux 8 machine (Fri Oct 28 2005 - 00:44:20 PDT)
- Re: AMBER: AMBER compilation error (Fri Oct 07 2005 - 02:46:24 PDT)
- Re: AMBER: Installation error - icc: command not found (Wed Oct 05 2005 - 02:47:31 PDT)
- Re: AMBER: cut-offs in non-periodic simulations (Mon Oct 03 2005 - 12:15:19 PDT)
Angelo Pugliese
- Re: AMBER: question about grid in ptraj (Fri Oct 07 2005 - 02:23:17 PDT)
Anna Feldman-Salit
- AMBER: parameters for pyridoxal phosphate (Fri Oct 07 2005 - 06:46:29 PDT)
Anthony Cruz
- AMBER: REMD trajectory error!!! (Fri Oct 28 2005 - 11:10:18 PDT)
- Fwd: Re: AMBER: REMD error!!! (Fri Oct 28 2005 - 06:06:39 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 12:13:20 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 09:48:12 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 07:45:32 PDT)
- AMBER: REMD error!!! (Thu Oct 20 2005 - 06:53:18 PDT)
Anton B. Guliaev
- AMBER: Metals with Amber (Fri Oct 28 2005 - 10:09:07 PDT)
Ben-Zhuo Lu
- AMBER: using position restraints in target MD? (Fri Oct 21 2005 - 11:58:05 PDT)
Bill Ross
- RE: AMBER: vdw of h atoms (Fri Oct 28 2005 - 17:21:56 PDT)
- Re: AMBER: vdw of h atoms (Fri Oct 28 2005 - 15:13:59 PDT)
- Re: AMBER: Metals with Amber (Fri Oct 28 2005 - 13:56:50 PDT)
- Re: AMBER: seg fault error in resp (Thu Oct 27 2005 - 11:40:47 PDT)
- Re: AMBER: seg fault error in resp (Wed Oct 26 2005 - 09:35:38 PDT)
- Re: AMBER: Is MM-PBSA doable for transition metals ? (Mon Oct 24 2005 - 10:10:44 PDT)
Carlos Simmerling
- Re: AMBER: GBSA simulation problem (Mon Oct 31 2005 - 04:25:22 PST)
- Re: Fwd: Re: AMBER: REMD error!!! (Fri Oct 28 2005 - 07:38:48 PDT)
- Re: AMBER: REMD trajectory error!!! (Fri Oct 28 2005 - 10:06:44 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 13:03:20 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 12:03:13 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 09:18:18 PDT)
- Re: AMBER: Increase the runtime of Amber benchmarks (Wed Oct 26 2005 - 04:30:37 PDT)
- Re: AMBER: Targeted MD (Thu Oct 20 2005 - 11:31:21 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 10:30:13 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 09:28:15 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 09:14:25 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 08:00:22 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 06:35:13 PDT)
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 05:05:41 PDT)
- Re: AMBER: Neutral C-terminal residue (Wed Oct 19 2005 - 04:40:10 PDT)
- Re: AMBER: Question about NVE simulation. (Tue Oct 18 2005 - 13:23:02 PDT)
- Re: AMBER: Question about NVE simulation. (Tue Oct 18 2005 - 05:02:39 PDT)
- Re: AMBER: Free energy for L and D amino acids (Sun Oct 16 2005 - 09:05:03 PDT)
- Re: AMBER: problem with temperature weights (Sat Oct 08 2005 - 04:03:41 PDT)
- Re: AMBER: problem with temperature weights (Fri Oct 07 2005 - 09:55:12 PDT)
- Re: AMBER: question temperature coupling tautp value for RNA (Tue Oct 04 2005 - 05:42:07 PDT)
Cenk Andac
- AMBER: QMMM for copper complexes! (Mon Oct 24 2005 - 10:12:22 PDT)
- AMBER: Is MM-PBSA doable for transition metals ? (Mon Oct 24 2005 - 09:55:27 PDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED (Mon Oct 24 2005 - 09:43:36 PDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED (Mon Oct 24 2005 - 09:12:30 PDT)
- AMBER: Problem with the QMMM example in AMBER 2004 tutorial (Sun Oct 23 2005 - 09:31:45 PDT)
- Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED (Sat Oct 22 2005 - 11:02:00 PDT)
- Problem solved! Re: AMBER: How to get PDB structures optimized for RED-II (Sat Oct 22 2005 - 10:38:58 PDT)
- Re: AMBER: How to get PDB structures optimized for RED-II (Fri Oct 14 2005 - 10:14:02 PDT)
- Re: AMBER: How to get PDB structures optimized for RED-II (Sat Oct 08 2005 - 06:34:42 PDT)
chai ann ng
- Re: AMBER: Cyclohexane solvent Box (Mon Oct 17 2005 - 07:27:13 PDT)
chaiann ng
- AMBER: Cyclohexane solvent Box (Sun Oct 16 2005 - 21:43:21 PDT)
Chunhu Tan
- Re: AMBER: Question about NVE simulation. (Tue Oct 18 2005 - 12:39:43 PDT)
- AMBER: How to simulate a crystal structure? (Tue Oct 11 2005 - 16:22:39 PDT)
Claire Zerafa
- AMBER: error in safe (Mon Oct 24 2005 - 06:18:50 PDT)
- AMBER: Fw: pca with ptraj (Wed Oct 19 2005 - 05:02:08 PDT)
- AMBER: pca with ptraj (Mon Oct 17 2005 - 16:11:21 PDT)
- AMBER: PCA (Tue Oct 11 2005 - 06:33:49 PDT)
David A. Case
- Re: AMBER: Unknown atomtypes in amber (Sat Oct 29 2005 - 10:06:20 PDT)
- Re: AMBER: problems installing amber 7 on a RH Linux 8 machine (Thu Oct 27 2005 - 12:33:33 PDT)
- Re: AMBER: parmchk error : Cannot open CONNECT.TPL, exit (Tue Oct 25 2005 - 14:16:35 PDT)
- Re: AMBER: xleap with modified residue (Mon Oct 24 2005 - 10:36:40 PDT)
- Re: AMBER: rdparm: a parameter array overflowed (Mon Oct 24 2005 - 09:00:50 PDT)
- Re: Re: AMBER: delphi and surface in MMPBSA (Sat Oct 22 2005 - 09:44:37 PDT)
- Re: AMBER: Dipolar coupling refinement (Fri Oct 21 2005 - 18:03:43 PDT)
- Re: AMBER: antechamber -- missing improper torsions (Fri Oct 21 2005 - 10:57:31 PDT)
- Re: (2) Re: AMBER: F,Cl,Br,I in MMPBSA (Fri Oct 21 2005 - 08:31:06 PDT)
- Re: AMBER: amber file formats. (Thu Oct 20 2005 - 14:32:29 PDT)
- Re: AMBER: amber file formats. (Thu Oct 20 2005 - 09:20:36 PDT)
- Re: AMBER: delphi and surface in MMPBSA (Thu Oct 20 2005 - 09:06:15 PDT)
- Re: AMBER: GNU Autotool integration for Amber8! (Wed Oct 19 2005 - 16:41:32 PDT)
- Re: AMBER: GNU Autotool integration for Amber8! (Tue Oct 18 2005 - 09:54:37 PDT)
- Re: AMBER: sander error (Tue Oct 18 2005 - 07:59:39 PDT)
- Re: AMBER: F,Cl,Br,I in MMPBSA (Mon Oct 17 2005 - 08:10:17 PDT)
- Re: AMBER: AMBER goes in a Loop (Fri Oct 14 2005 - 08:05:41 PDT)
- Re: AMBER: Scaling factor of NMR restraint (Fri Oct 14 2005 - 08:00:01 PDT)
- Re: AMBER: How to simulate a crystal structure? (Wed Oct 12 2005 - 08:17:35 PDT)
- Re: AMBER: warning in leap (Tue Oct 11 2005 - 15:17:20 PDT)
- Re: AMBER: PCA (Tue Oct 11 2005 - 07:32:36 PDT)
- Re: AMBER: sander error (Tue Oct 11 2005 - 07:27:20 PDT)
- Re: AMBER: Minimization in sander and nmode (Thu Oct 06 2005 - 03:06:33 PDT)
David Mobley
- Re: AMBER: antechamber -- missing improper torsions (Fri Oct 21 2005 - 10:21:01 PDT)
- Re: AMBER: antechamber -- missing improper torsions (Tue Oct 18 2005 - 12:21:39 PDT)
- AMBER: antechamber -- missing improper torsions (Mon Oct 17 2005 - 11:33:43 PDT)
Donald Thomas
- AMBER: Using RED to calculate partial charges of new amino acid (Tue Oct 25 2005 - 07:50:40 PDT)
du yongchun
- AMBER: some questions when using ATP (Wed Oct 26 2005 - 19:28:44 PDT)
Fabien Cailliez
- AMBER: cut-offs in non-periodic simulations (Mon Oct 03 2005 - 09:31:26 PDT)
Furse, Kristina Elisabet
- Re: AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 15:10:54 PDT)
FyD
- Re: AMBER: seg fault error in resp (Thu Oct 27 2005 - 07:39:44 PDT)
- Re: AMBER: seg fault error in resp (Wed Oct 26 2005 - 09:13:05 PDT)
- Re: AMBER: seg fault error in resp (Wed Oct 26 2005 - 07:06:40 PDT)
- Re: AMBER: Using RED to calculate partial charges of new amino acid (Wed Oct 26 2005 - 03:36:21 PDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED (Mon Oct 24 2005 - 22:58:56 PDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED (Mon Oct 24 2005 - 01:44:31 PDT)
- Re: AMBER: Simulating transition metals in amber (Mon Oct 24 2005 - 01:21:52 PDT)
- Re: Problem solved! Re: AMBER: How to get PDB structures optimized for RED-II (Mon Oct 24 2005 - 01:27:07 PDT)
- Re: AMBER: Neutral C-terminal residue (Wed Oct 19 2005 - 05:17:12 PDT)
- Re: AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 12:16:19 PDT)
- RE: AMBER: Scaling factor of NMR restraint (Fri Oct 14 2005 - 23:34:58 PDT)
- AMBER: Scaling factor of NMR restraint (Fri Oct 14 2005 - 07:28:24 PDT)
Guanglei Cui
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 08:51:21 PDT)
- Re: AMBER: QMMM question (Mon Oct 10 2005 - 07:14:20 PDT)
- Re: AMBER: sander error (Mon Oct 10 2005 - 06:52:29 PDT)
Guillaume Bollot
- AMBER: GBSA simulation problem (Mon Oct 31 2005 - 00:23:26 PST)
Gustavo Pierdominici Sottile
- AMBER: vdw of h atoms (Fri Oct 28 2005 - 12:16:10 PDT)
haixiao jin
- AMBER: with two water molecules in active site, how to calculate the free energy of ligand bound to complex? (Sun Oct 30 2005 - 22:27:08 PST)
- AMBER: How to calculate binding free energy of ligand bound to complex with two active-site water molecules? (Tue Oct 25 2005 - 00:55:46 PDT)
- Re: AMBER: trouble in calculating the distance between O atom of water molecule and atom of residue (Thu Oct 20 2005 - 19:03:43 PDT)
- Re: AMBER: ptraj hbond analysis (Thu Oct 20 2005 - 04:07:30 PDT)
- AMBER: trouble in calculating the distance between O atom of water molecule and atom of residue (Thu Oct 20 2005 - 03:49:29 PDT)
Hannes Barsch
- AMBER: AMBER tests (x86-64, PGI / Intel) (Wed Oct 26 2005 - 00:54:36 PDT)
- AW: AMBER: compiling amber with pgi 5.2.4 (Tue Oct 25 2005 - 08:42:53 PDT)
- AMBER: compiling amber with pgi 5.2.4 (Mon Oct 24 2005 - 05:21:11 PDT)
Hannes Loeffler
- AMBER: program to visualize crystal symmetries (Tue Oct 18 2005 - 01:36:31 PDT)
Heike.Meiselbach.chemie.uni-erlangen.de
- Re: AMBER: problem with xleap (Tue Oct 18 2005 - 07:07:02 PDT)
Ilyas Yildirim
- AMBER: rounding in xleap when using saveoff command... (Fri Oct 28 2005 - 18:26:22 PDT)
- AMBER: Improper Torsional Parameters (Fri Oct 28 2005 - 17:59:35 PDT)
Imran Khan
- AMBER: Increase the runtime of Amber benchmarks (Wed Oct 26 2005 - 02:23:10 PDT)
- Re: AMBER: AMBER goes in a Loop (Fri Oct 14 2005 - 09:37:44 PDT)
- AMBER: AMBER goes in a Loop (Thu Oct 13 2005 - 10:05:40 PDT)
Jakub Kostal
- AMBER: using constraints with QM/MM (Wed Oct 26 2005 - 11:58:40 PDT)
Javier Pérez Mirón
- AMBER: maxgrp error (Tue Oct 11 2005 - 12:55:46 PDT)
Jiri Sponer
- Re: AMBER: vdw of h atoms (Fri Oct 28 2005 - 13:00:19 PDT)
Jiten
- AMBER: Fw: The default of HIS in leaprc : HID or HIE ? (Tue Oct 04 2005 - 09:34:54 PDT)
- AMBER: The default of HIS in leaprc : HID or HIE ? (Tue Oct 04 2005 - 09:21:52 PDT)
Joachim Reichelt
- Re: AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 09:45:42 PDT)
Joseph Nachman
- Re: AMBER: program to visualize crystal symmetries (Tue Oct 18 2005 - 09:21:22 PDT)
- Re: AMBER: How to simulate a crystal structure? (Wed Oct 12 2005 - 09:57:56 PDT)
jpragati.ibab.ac.in
- AMBER: Problem during production!! (Tue Oct 04 2005 - 01:33:48 PDT)
- AMBER: Error check COM velocity!! (Mon Oct 03 2005 - 04:58:01 PDT)
julien
- AMBER: porblem in ptraj (Thu Oct 20 2005 - 02:19:47 PDT)
JunJun Liu
- Re: AMBER: Free energy calculation for protein-protein complex usingMM_PBSA (Sat Oct 22 2005 - 00:45:25 PDT)
Junmei Wang
- RE: AMBER: antechamber dimesion size, again (Thu Oct 06 2005 - 12:29:04 PDT)
Karsten Suhre
- Re: AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 09:45:36 PDT)
- Re: AMBER: program to visualize crystal symmetries (Tue Oct 18 2005 - 02:13:23 PDT)
Kateryna Miroshnychenko
- Re: AMBER: seg fault error in resp (Thu Oct 27 2005 - 07:14:24 PDT)
- Re: AMBER: seg fault error in resp (Wed Oct 26 2005 - 08:26:37 PDT)
- AMBER: seg fault error in resp (Wed Oct 26 2005 - 06:24:37 PDT)
Kathleen Erickson
- Re: AMBER: amber8 parallel sander (Mon Oct 03 2005 - 13:37:47 PDT)
Kenley Barrett
- Re: AMBER: xleap with modified residue (Thu Oct 20 2005 - 11:25:41 PDT)
konnipati murali
- AMBER: Hi..I am new to AMBER.(compilation with MPICH-G2 libraries)... (Sat Oct 22 2005 - 23:38:28 PDT)
Lars Packschies
- AMBER: xleap, opteron, pgi and segmentation fault. (Wed Oct 26 2005 - 06:57:40 PDT)
Linchen Gong
- AMBER: question about grid in ptraj (Thu Oct 06 2005 - 06:03:00 PDT)
Lishan Yao
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 11:59:29 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 10:54:26 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 10:03:58 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 08:50:15 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 08:33:20 PDT)
- AMBER: restart file and crd file (Thu Oct 27 2005 - 06:37:29 PDT)
luaj.sohu.com
- AMBER: how can I constitute T-phosphotyrosine group ? (Wed Oct 12 2005 - 21:50:16 PDT)
- AMBER: how can I constitute T-phosphotyrosine group ? (Tue Oct 11 2005 - 07:25:02 PDT)
- AMBER: how to constitute T-phosphotyrosine group? (Tue Oct 11 2005 - 05:28:38 PDT)
Madjid Taghdir
- AMBER: Can I trust ANAL result? (Tue Oct 04 2005 - 03:55:51 PDT)
Majid moghaddam
- Re: AMBER: I am looking forward to hearing from you. (Wed Oct 26 2005 - 03:18:58 PDT)
Manish Datt
- Re: AMBER: problem with temperature weights (Fri Oct 07 2005 - 21:50:07 PDT)
- AMBER: problem with temperature weights (Fri Oct 07 2005 - 08:43:52 PDT)
Marcela Madrid
- AMBER: warning in leap (Tue Oct 11 2005 - 14:26:42 PDT)
Marios Constantinou
- AMBER: problems installing amber 7 on a RH Linux 8 machine (Thu Oct 27 2005 - 08:28:00 PDT)
Mark Williamson
- Re: AMBER: Simple 3D Molecule Visualization (Tue Oct 18 2005 - 09:50:07 PDT)
- Re: AMBER: problem with xleap (Tue Oct 18 2005 - 07:04:43 PDT)
mathew k varghese
- Re: AMBER: (no subject) (Thu Oct 20 2005 - 01:31:21 PDT)
- AMBER: (no subject) (Wed Oct 19 2005 - 22:19:06 PDT)
Megan G
- AMBER: oxidised methionine residue (Fri Oct 14 2005 - 08:45:21 PDT)
Mehdi Davari
- AMBER: I am looking forward to hearing from you. (Tue Oct 25 2005 - 11:38:28 PDT)
Melinda Layten
- Re: Re: AMBER: REMD error!!! (Fri Oct 28 2005 - 08:26:46 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 11:35:54 PDT)
Mingfeng Yang
- AMBER: tkbc2 (Mon Oct 31 2005 - 14:59:17 PST)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 12:40:51 PDT)
- Re: AMBER: restart file and crd file (Thu Oct 27 2005 - 09:11:16 PDT)
- Re: AMBER: Simple 3D Molecule Visualization (Wed Oct 19 2005 - 11:19:18 PDT)
- Re: AMBER: Simple 3D Molecule Visualization (Wed Oct 19 2005 - 11:19:01 PDT)
- Re: AMBER: Installation error - icc: command not found (Wed Oct 05 2005 - 07:14:16 PDT)
mk mk
- AMBER: GNU Autotool integration for Amber8! (Sun Oct 16 2005 - 00:06:11 PDT)
MURAT CETINKAYA
- Re: AMBER: amber8 parallel sander (Mon Oct 03 2005 - 19:04:04 PDT)
nadtanet
- AMBER: Manganese ion parameter (Tue Oct 04 2005 - 04:55:59 PDT)
Nitin Bhardwaj
- Re: AMBER: Unknown atomtypes in amber (Sat Oct 29 2005 - 12:24:04 PDT)
- AMBER: Unknown atomtypes in amber (Thu Oct 27 2005 - 10:26:49 PDT)
- Re: AMBER: Antechamber error (Tue Oct 25 2005 - 17:16:20 PDT)
- AMBER: Antechamber error (Tue Oct 25 2005 - 16:27:39 PDT)
- Re: AMBER: parmchk error : Cannot open CONNECT.TPL, exit (Tue Oct 25 2005 - 14:52:32 PDT)
- AMBER: parmchk error : Cannot open CONNECT.TPL, exit (Tue Oct 25 2005 - 14:08:02 PDT)
- AMBER: Parameters and topology for Diacylglycerol (DAG) (Mon Oct 10 2005 - 11:02:14 PDT)
Peter Varnai
- Re: AMBER: troubleshooting replica exchange (Thu Oct 13 2005 - 00:44:59 PDT)
Pradipta Bandyopadhyay
- AMBER: Energy output problem! (Tue Oct 04 2005 - 05:08:04 PDT)
Rhoad, Jonathan S.
- RE: AMBER: vdw of h atoms (Fri Oct 28 2005 - 16:56:24 PDT)
Robert Duke
- Re: AMBER: compiling amber with pgi 5.2.4 (Mon Oct 24 2005 - 05:44:42 PDT)
- Re: AMBER: sander error (Tue Oct 18 2005 - 08:18:05 PDT)
- Re: AMBER: sander error (Tue Oct 18 2005 - 07:49:05 PDT)
- Re: AMBER: AMBER goes in a Loop (Fri Oct 14 2005 - 10:58:50 PDT)
- Re: AMBER: amber8 parallel sander (Mon Oct 03 2005 - 22:26:28 PDT)
Ross Walker
- RE: AMBER: error in safe (Mon Oct 24 2005 - 07:25:38 PDT)
- RE: AMBER: Problem with the QMMM example in AMBER 2004 tutorial (Sun Oct 23 2005 - 10:02:55 PDT)
- RE: AMBER: xleap with modified residue (Thu Oct 20 2005 - 11:58:53 PDT)
- RE: AMBER: antechamber -- missing improper torsions (Tue Oct 18 2005 - 20:33:13 PDT)
- RE: AMBER: sander error (Tue Oct 18 2005 - 07:23:18 PDT)
- RE: AMBER: antechamber -- missing improper torsions (Mon Oct 17 2005 - 15:04:23 PDT)
- RE: AMBER: Cyclohexane solvent Box (Mon Oct 17 2005 - 07:03:54 PDT)
- RE: AMBER: Scaling factor of NMR restraint (Fri Oct 14 2005 - 07:55:44 PDT)
- RE: AMBER: QMMM question (Mon Oct 10 2005 - 07:38:50 PDT)
- RE: AMBER: sander error (Mon Oct 10 2005 - 07:13:35 PDT)
- RE: AMBER: question temperature coupling tautp value for RNA (Mon Oct 03 2005 - 15:50:47 PDT)
S.Sundar Raman
- AMBER: ptraj hbond analysis (Wed Oct 19 2005 - 06:28:09 PDT)
- AMBER: Free energy for L and D amino acids (Sun Oct 16 2005 - 08:40:24 PDT)
s0344557.sms.ed.ac.uk
- AMBER: Dipolar coupling refinement (Fri Oct 21 2005 - 06:04:39 PDT)
Scott Brozell
- Re: AMBER: AMBER tests (x86-64, PGI / Intel) (Thu Oct 27 2005 - 17:42:37 PDT)
Sergio E. Wong
- Re: AMBER: troubleshooting replica exchange (Wed Oct 12 2005 - 17:48:45 PDT)
Shishir
- Re: AMBER: amber file formats. (Thu Oct 20 2005 - 13:37:16 PDT)
- AMBER: amber file formats. (Wed Oct 19 2005 - 13:16:04 PDT)
Shuting Wei
- AMBER: Cluster analysis by MMTSB or ptraj (Fri Oct 28 2005 - 08:30:49 PDT)
Sukjoon Yoon
- AMBER: AMBER compilation error (Thu Oct 06 2005 - 19:32:36 PDT)
- AMBER: AMBER compilation - RH Enterprise 4, Xeon EM64T (Tue Oct 04 2005 - 22:55:07 PDT)
- AMBER: Installation error - icc: command not found (Tue Oct 04 2005 - 18:13:11 PDT)
Sébastien Fiorucci
- AMBER: Neutral C-terminal residue (Wed Oct 19 2005 - 03:12:44 PDT)
tanc.uci.edu
- AMBER: Question about NVE simulation. (Mon Oct 17 2005 - 22:45:51 PDT)
Thomas Cheatham
- Re: AMBER: ptraj hbond analysis (Thu Oct 20 2005 - 19:03:36 PDT)
- Re: AMBER: trouble in calculating the distance between O atom of water molecule and atom of residue (Thu Oct 20 2005 - 18:50:43 PDT)
Thomas Steinbrecher
- AMBER: Simulating transition metals in amber (Thu Oct 20 2005 - 02:32:58 PDT)
Toshifumi Yui
- Re: AMBER: antechamber dimesion size, again (Thu Oct 06 2005 - 19:14:47 PDT)
- AMBER: antechamber dimesion size, again (Thu Oct 06 2005 - 02:44:29 PDT)
Viktor Hornak
- Re: AMBER: using position restraints in target MD? (Fri Oct 21 2005 - 13:14:42 PDT)
Vlad Cojocaru
- AMBER: problem with xleap (Tue Oct 18 2005 - 06:56:38 PDT)
Wei Zhang
- Re: AMBER: REMD error!!! (Thu Oct 20 2005 - 09:15:51 PDT)
Whitney Allen
- RE: AMBER: xleap with modified residue (Mon Oct 24 2005 - 09:24:25 PDT)
- AMBER: xleap with modified residue (Thu Oct 20 2005 - 11:12:42 PDT)
- AMBER: Targeted MD (Thu Oct 20 2005 - 11:04:31 PDT)
wulei
- AMBER: Is AMBER package suitable for simulating multiple molecule in solvent? (Wed Oct 05 2005 - 02:26:00 PDT)
xiaoqin huang
- AMBER: Re: restraints (Wed Oct 26 2005 - 14:25:03 PDT)
- Re: AMBER: QMMM question (Mon Oct 10 2005 - 11:59:55 PDT)
- AMBER: QMMM question (Thu Oct 06 2005 - 21:09:53 PDT)
Xuebin Qiao
- Re: AMBER: error in safe (Mon Oct 24 2005 - 08:26:41 PDT)
- Re: AMBER: compiling amber with pgi 5.2.4 (Mon Oct 24 2005 - 08:20:08 PDT)
- Re: AMBER: GNU Autotool integration for Amber8! (Thu Oct 20 2005 - 06:55:10 PDT)
- Re: AMBER: GNU Autotool integration for Amber8! (Wed Oct 19 2005 - 08:17:54 PDT)
Yam
- Re: AMBER: (no subject) (Thu Oct 20 2005 - 00:31:37 PDT)
- AMBER: sander error (Mon Oct 17 2005 - 19:10:50 PDT)
- RE: AMBER: sander error (Tue Oct 11 2005 - 02:21:08 PDT)
- AMBER: sander error (Sun Oct 09 2005 - 19:04:20 PDT)
ying xiong
- Re: Re: AMBER: rdparm: a parameter array overflowed (Mon Oct 24 2005 - 23:03:27 PDT)
- AMBER: rdparm: a parameter array overflowed (Mon Oct 24 2005 - 02:17:33 PDT)
Yong Xu
- AMBER: amber7.0: F,Br,radius in MMPBSA (Sat Oct 29 2005 - 07:47:21 PDT)
- AMBER: amber7.0: F,Br,radius in MMPBSA (Sat Oct 29 2005 - 07:46:00 PDT)
- AMBER: atmtypenumbers (Mon Oct 24 2005 - 20:25:00 PDT)
- Re: (2) Re: AMBER: F,Cl,Br,I in MMPBSA (Thu Oct 20 2005 - 18:21:33 PDT)
- Re: Re: AMBER: F,Cl,Br,I in MMPBSA (Thu Oct 20 2005 - 18:12:15 PDT)
- Re: Re: AMBER: delphi and surface in MMPBSA (Thu Oct 20 2005 - 18:09:07 PDT)
- AMBER: delphi and surface in MMPBSA (Thu Oct 20 2005 - 07:07:17 PDT)
- AMBER: again: F, Cl, Br, I in MMPBSA (Fri Oct 14 2005 - 20:07:59 PDT)
- AMBER: F,Cl,Br,I in MMPBSA (Wed Oct 12 2005 - 01:58:53 PDT)
YoungJin Cho
- Re: AMBER: R factors in NMR intensity refinement (Thu Oct 06 2005 - 09:56:02 PDT)
Yuqin Cai
- AMBER: R factors in NMR intensity refinement (Thu Oct 06 2005 - 09:29:31 PDT)
Zhuang
- AMBER: troubleshooting replica exchange (Wed Oct 12 2005 - 16:46:08 PDT)
- AMBER: question temperature coupling tautp value for RNA (Mon Oct 03 2005 - 15:40:09 PDT)
- AMBER: question temperature coupling tautp value for RNA (Mon Oct 03 2005 - 15:40:23 PDT)

Amber Archive Oct 2005 by author