hi,amber
I have some questions when using ATP in amber8.I download atp prep &=20
frcmod files in
http://pharmacy.man.ac.uk/amber/,and then use them in=20
tleap.The command is as following:
source leaprc.gaff
mods=3Dloadamberparams frcmod.phos(downloaded)
loadamberprep ATP.prep(downloaded)
x=3Dsavepdb atp atp.pdb
But when I use VMD to see the atp.pdb ,I find the there are not bonds=20
between phoshate groups. Can you tell me why and how I modify them.
Thanks ! =20
du
2005.6.2
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Received on Thu Oct 27 2005 - 03:53:00 PDT
