Amber Archive Oct 2001 by subject
- (no subject)
- 5-methyl deoxycytosine parameters
- ?s: Xeon vs. Athlon, latency
- [Fwd: ?s: Xeon vs. Athlon, latency]
- adding water
- Amber 6 MDCRD Files > 2GB in 32 bit Linux.
- Amber6 on SuSE Linux
- ANAL
- analysis problem
- Aqvist LJ parameters
- belly with GB term
- Binary mdcrd
- Can amber calculate the gibbs perturb energy when a ligand added a group
- charges for non-standard AAs
- Code modification.
- color in xleap
- Define flexible residues during MD simulation
- distribution of Na+ around DNA
- DNA strands separated...
- Drivers to support Stereo Viewing in VMD etc using Standard GeForce Cards
- energy decomposition
- Err in equilibration run
- GB and Ions, 2nd try
- generation of small organic molecules on xleap
- h-bond energy
- help
- help for restrained minimization
- how to add Zn Ca parameters
- How to turn off PME?
- image command of ptraj
- IMPORTANT Amber mail list announcement
- Interface and Sander_classic
- Interface program installation
- ISTAR option and performance
- iwrap
- LINMIN Failure
- MAX_RSTACK
- Maxwell-Boltzmann distribution of velocities
- Methane minimization using Interface
- MM-PBSA; E(internal)
- NAN errors during production runs
- Need some help with Amber/Linux
- NFFT
- NPSCAL parameter
- NPT to NVE ensemble
- NSCM setting to remove center of mass motion
- P4 benchmarks posted
- param CT-CT-CT-OH
- parameters
- possible bug in carnal in AMBER5
- Possible error in AMBER parm94 file?
- post-processing of energy analysis
- problem in a short MD with protein fixed
- Problem in GIBBS!
- problem with ambpdb
- prowat test difficulties
- question about implicit solvation model with AMBER
- R: color in xleap
- RESP charges
- RESP charges (correction)
- RESP charges!
- roar-cp crashed
- sander_classic
- substracting of MM nonbondeb potential from QM curve
- Temperature and pressure couplings
- torsional profile
- torsional profile with MD
- trajectory analysis
- unusual parameters
- what should change in the parameter?
- Xeon vs. Athlon, latency
- Xleap, PDB file format
- xleap: japanese keyboad
- Last message date: Wed Oct 31 2001 - 12:57:43 PST
- Archived on: Fri Dec 13 2024 - 05:53:17 PST