DNA strands separated...

From: Jithesh P.V. <jithesh_at_cdac.ernet.in>
Date: Mon 22 Oct 2001 12:37:09 +0530 (IST)


I'm trying to analyse the results of a PME MD run of DNA in water. I've
joined the trajectories and imaged using ptraj. When the single trajectory
was visualised using MoilView, I could see that sometimes the two strands
of DNA are getting separated. Is there any problem in going ahead with
analysis of this trajectory? or is there any solution to prevent this

Thanks for your suggestions..

Jithesh P.V.
Bioinformatics Applications
National PARAM Supercomputing Facility
Centre for Development of Advanced Computing
Pune University Campus, Pune, India - 411007.
Received on Mon Oct 22 2001 - 00:07:09 PDT
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