Amber Archive Aug 2001: by subject

(no subject)
- Xiaolin Chuang (Thu Aug 23 2001 - 09:00:49 PDT)
(to "Xiaolin Chuang")
- Elsa de Sousa Henriques (Fri Aug 24 2001 - 11:38:05 PDT)
... error message
- Rozita Dara (Thu Aug 23 2001 - 12:14:07 PDT)
adding atoms and amino acid residues
- Omer Katzenelson (Tue Aug 21 2001 - 14:25:31 PDT)
- Raik Grunberg (Tue Aug 21 2001 - 01:20:50 PDT)
- Bill Ross (Mon Aug 20 2001 - 18:10:48 PDT)
- Marcela Madrid (Mon Aug 20 2001 - 14:52:31 PDT)
AMBER6 on IBMSP3 (again)
- Xavier Deupi (Fri Aug 17 2001 - 08:03:36 PDT)
- Sanjeev B.S. (Fri Aug 17 2001 - 01:10:11 PDT)
- Sanjeev B.S. (Fri Aug 17 2001 - 00:06:11 PDT)
- Sanjeev B.S. (Thu Aug 16 2001 - 13:10:04 PDT)
Analysising the results
- Rozita Dara (Wed Aug 22 2001 - 13:03:28 PDT)
box size
- tianxiao young (Wed Aug 15 2001 - 21:31:40 PDT)
Can amber calculate the gibbs perturb energy when a ligand added a group
- sxzheng (Mon Aug 06 2001 - 20:26:13 PDT)
CARNAL
- Omer Katzenelson (Tue Aug 21 2001 - 18:27:54 PDT)
changing the g77 optimization for compiling sander_classic
- Margaret Cheung (Mon Aug 20 2001 - 17:25:41 PDT)
- Margaret Cheung (Mon Aug 20 2001 - 13:08:30 PDT)
charge on protein
- Giulio Rastelli (Wed Aug 15 2001 - 10:08:43 PDT)
Combination of two solvents
- Alexander Steudle (Wed Aug 15 2001 - 07:58:15 PDT)
computing order parameters from an MD trajectory
- Jake Isaacs (Mon Aug 27 2001 - 07:45:58 PDT)
coordinate resetting ?
- A.Madhumalar (Mon Aug 27 2001 - 05:50:59 PDT)
- Guido Hansen (Mon Aug 27 2001 - 01:46:51 PDT)
defining states in Gibbs
- Sophia Kondratova (Wed Aug 22 2001 - 12:39:35 PDT)
density in equilibration?
- Shixiang Yan (Tue Aug 21 2001 - 09:38:35 PDT)
ERR IN MD RUN!!
- A.Madhumalar (Sun Aug 19 2001 - 01:40:19 PDT)
Error message
- Jung-Hsing Lin (Thu Aug 23 2001 - 10:54:27 PDT)
- Rozita Dara (Thu Aug 23 2001 - 10:46:12 PDT)
- Rozita Dara (Thu Aug 23 2001 - 08:59:57 PDT)
free energy contribution of selected atoms vs. MM-PB/GBSA
- Michal Otyepka (Fri Aug 17 2001 - 04:25:55 PDT)
Gibbs
- sara nunez (Fri Aug 17 2001 - 08:50:25 PDT)
Gibbs and cutoff!
- PRADIPTA Bandyopadhyay (Sat Aug 04 2001 - 15:23:30 PDT)
How to deal with the little molcule?
- sxzheng (Fri Aug 24 2001 - 07:48:22 PDT)
L-J mixing rules?
- Kevin Van Workum (Mon Aug 27 2001 - 09:10:24 PDT)
Leap and parm/pert!
- PRADIPTA Bandyopadhyay (Mon Aug 06 2001 - 16:45:00 PDT)
Linux-cluster performance
- Jarrod Smith (Wed Aug 15 2001 - 10:23:09 PDT)
- Florian Barth (Wed Aug 15 2001 - 06:07:51 PDT)
Linux-cluster performance)
- Tru Huynh (Mon Aug 20 2001 - 12:09:18 PDT)
MAXGRP parameter
- HAllawi_at_TWT.com (Mon Aug 20 2001 - 10:18:33 PDT)
Model(l)ing 2001 in Erlangen/Germany: Bursaries and Awards available!
- Harald Lanig (Mon Aug 06 2001 - 06:04:51 PDT)
movie for subset of atoms
- DeLano, Warren (Thu Aug 30 2001 - 14:32:53 PDT)
- Florian Barth (Thu Aug 30 2001 - 14:16:00 PDT)
- Anton B. Guliaev (Thu Aug 30 2001 - 13:42:14 PDT)
Mystery protons!
- Sanjeev B.S. (Sun Aug 26 2001 - 05:03:11 PDT)
Newton-Raphson minimization!
- Dat H. Nguyen (Thu Aug 30 2001 - 16:20:56 PDT)
NPT restart problem
- Sanjeev B.S. (Fri Aug 31 2001 - 06:19:48 PDT)
- Sanjeev B.S. (Fri Aug 31 2001 - 03:16:37 PDT)
ntc in sander6
- Xavier Deupi (Sat Aug 25 2001 - 05:08:12 PDT)
polarization
- Jerry wu (Fri Aug 17 2001 - 02:29:07 PDT)
problem using xleap and tleap
- Bill Ross (Wed Aug 22 2001 - 10:23:27 PDT)
- Rozita Dara (Wed Aug 22 2001 - 10:13:08 PDT)
Protonated Water
- Dr. Andrea Cavalli (Thu Aug 16 2001 - 00:37:33 PDT)
ptraj
- Thomas Cheatham (Thu Aug 23 2001 - 09:36:51 PDT)
- Troy Wymore (Thu Aug 23 2001 - 08:30:23 PDT)
question
- Jie Guo (Thu Aug 30 2001 - 10:58:37 PDT)
questions for group specification...
- backy_at_ibms.sinica.edu.tw (Wed Aug 01 2001 - 02:11:59 PDT)
reflector back on.
- jim caldwell (Tue Aug 14 2001 - 12:30:19 PDT)
residue numbering in dimers and trimers
- samantha hughes (Fri Aug 31 2001 - 00:43:55 PDT)
- Bayly, Christopher (Thu Aug 30 2001 - 11:30:47 PDT)
- Bill Ross (Thu Aug 30 2001 - 10:00:44 PDT)
- Joseph Nachman (Thu Aug 30 2001 - 09:41:48 PDT)
sander input in Amber 6
- Anton B. Guliaev (Fri Aug 17 2001 - 08:14:32 PDT)
shake tricks?
- Peter Varnai (Thu Aug 30 2001 - 06:57:00 PDT)
SPC water
- Jerry wu (Fri Aug 31 2001 - 07:01:32 PDT)
summary: AMBER6 on IBMSP3
- Xavier Deupi (Fri Aug 24 2001 - 00:04:19 PDT)
torsional profile
- Giulio Rastelli (Thu Aug 30 2001 - 17:02:39 PDT)
Utilizing Amber6 on Linux Cluster
- Sanjeev B.S. (Wed Aug 22 2001 - 22:31:58 PDT)
- David Konerding (Wed Aug 22 2001 - 12:41:13 PDT)
- Jung-Hsing Lin (Wed Aug 22 2001 - 10:49:25 PDT)
- Margaret Cheung (Wed Aug 22 2001 - 10:23:40 PDT)
- David Konerding (Wed Aug 22 2001 - 08:31:56 PDT)
- Scott E. Boesch (Wed Aug 22 2001 - 07:24:42 PDT)
varying cartesian restraint
- Raik Grunberg (Sun Aug 05 2001 - 02:48:28 PDT)
water molecules in a periodic box
- Giulio Rastelli (Mon Aug 06 2001 - 10:03:41 PDT)

Amber Archive Aug 2001 by subject