Amber Archive Aug 2001 by subject
- (no subject)
- (to "Xiaolin Chuang")
- ... error message
- adding atoms and amino acid residues
- AMBER6 on IBMSP3 (again)
- Analysising the results
- box size
- Can amber calculate the gibbs perturb energy when a ligand added a group
- CARNAL
- changing the g77 optimization for compiling sander_classic
- charge on protein
- Combination of two solvents
- computing order parameters from an MD trajectory
- coordinate resetting ?
- defining states in Gibbs
- density in equilibration?
- ERR IN MD RUN!!
- Error message
- free energy contribution of selected atoms vs. MM-PB/GBSA
- Gibbs
- Gibbs and cutoff!
- How to deal with the little molcule?
- L-J mixing rules?
- Leap and parm/pert!
- Linux-cluster performance
- Linux-cluster performance)
- MAXGRP parameter
- Model(l)ing 2001 in Erlangen/Germany: Bursaries and Awards available!
- movie for subset of atoms
- Mystery protons!
- Newton-Raphson minimization!
- NPT restart problem
- ntc in sander6
- polarization
- problem using xleap and tleap
- Protonated Water
- ptraj
- question
- questions for group specification...
- reflector back on.
- residue numbering in dimers and trimers
- sander input in Amber 6
- shake tricks?
- SPC water
- summary: AMBER6 on IBMSP3
- torsional profile
- Utilizing Amber6 on Linux Cluster
- varying cartesian restraint
- water molecules in a periodic box
- Last message date: Fri Aug 31 2001 - 07:01:32 PDT
- Archived on: Wed Oct 02 2024 - 05:53:15 PDT