Amber Archive Jan 2010: by messages with attachments

Re: [AMBER] problem with MM-PBSA Maryam Hamzehee (Sat Jan 02 2010 - 22:15:32 PST)
1. binding_energy.log (99537 bytes)
2. extract_coords.log (10130 bytes)
3. snapshot_statistics.out (2139 bytes)
RE: [AMBER] antechamber bond type error Mark M Huntress (Tue Jan 05 2010 - 16:18:51 PST)
1. retch.pdb (2750 bytes)
[AMBER] ff99SB in DNA tutorial Donald Thomas (Tue Jan 05 2010 - 20:31:02 PST)
1. nuc.png (24399 bytes)
2. nuc.pdb (24097 bytes)
Re: [AMBER] antechamber bond type error Dean Cuebas (Tue Jan 05 2010 - 21:48:41 PST)
1. frcmod.txt (1400 bytes)
2. retchmopac.mol2 (5414 bytes)
3. retchbcc.mol2 (5128 bytes)
[AMBER] Amber parameters and resp charge for Fe (or Zn) Hari Lamichhane (Thu Jan 07 2010 - 07:44:45 PST)
1. ZNLSPEHF321.LOG (791923 bytes)
[AMBER] rmsd problem luzhenw1.msu.edu (Sun Jan 10 2010 - 12:34:24 PST)
1. rmsd.png (22558 bytes)
[AMBER] Install problem Stefan weber (Tue Jan 12 2010 - 06:13:59 PST)
1. make_serial.log (193629 bytes)
2. 0x1BA9F5F5.asc (2749 bytes)
Re: [AMBER] Install problem Stefan weber (Tue Jan 12 2010 - 06:47:37 PST)
1. 0x1BA9F5F5.asc (2749 bytes)
[AMBER] PTRAJ clustering atom /hetatm problem Andrew Voronkov (Tue Jan 12 2010 - 08:50:40 PST)
1. 8_c0_cc.pdb (313082 bytes)
Re: [AMBER] The unperturbed charge of the unit: 0.010000 is not integral. Alan (Tue Jan 12 2010 - 10:02:17 PST)
1. Bej.none_neutral.ideal.mol2 (11276 bytes)
2. Bej_linux_sqm.out (20889 bytes)
3. Bej_mac_sqm.out (26224 bytes)
Re: [AMBER] Install problem -- solved Stefan weber (Tue Jan 12 2010 - 22:53:17 PST)
1. 0x1BA9F5F5.asc (2749 bytes)
[AMBER] TEST_FAILURES.diff zoran matovic (Wed Jan 13 2010 - 07:56:48 PST)
1. TEST_FAILURES.diff (20180 bytes)
[AMBER] sqm failed to fail Alan (Thu Jan 14 2010 - 04:12:54 PST)
1. Ium.none_neutral.pdb.mol2 (462 bytes)
[AMBER] how to combine MD trajectories with two different time steps Jayalakshmi Sridhar (Thu Jan 14 2010 - 09:59:15 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] how to combine MD trajectories with two different time steps Jayalakshmi Sridhar (Thu Jan 14 2010 - 10:19:44 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] Install problem John E. Kerrigan (Thu Jan 14 2010 - 11:06:27 PST)
1. kerrigje.vcf (363 bytes)
Re: RE: [AMBER] How to avoid Zn parametrization? Andrew Voronkov (Mon Jan 18 2010 - 01:32:05 PST)
1. tnk.pdb (220643 bytes)
[AMBER] AmberTools-1.3 Install Problem Hopkins, Robert (Mon Jan 18 2010 - 17:10:07 PST)
1. makeat13.log (12758 bytes)
[AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 08:55:47 PST)
1. jsridhar.vcf (205 bytes)
[AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 09:04:19 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 09:40:28 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 09:57:30 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 09:53:01 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 10:17:14 PST)
1. jsridhar.vcf (205 bytes)
Re: [AMBER] heat further an equilibrated system Jayalakshmi Sridhar (Fri Jan 22 2010 - 10:38:48 PST)
1. jsridhar.vcf (205 bytes)
Re: Re: [AMBER] AmberTools-1.3 Install Problem Hopkins, Robert (Mon Jan 25 2010 - 12:37:32 PST)
1. winmail.dat (0 bytes)
Re: [AMBER] URE residue not recognized in xleap Jason Swails (Mon Jan 25 2010 - 13:40:28 PST)
1. urea.off (1948 bytes)
[AMBER] Aborted tests for AmberTools-1.3 Hopkins, Robert (Mon Jan 25 2010 - 16:03:26 PST)
1. pdbent.stackdump (1086 bytes)
2. amoeba.stackdump (1086 bytes)
RE: [AMBER] workshop #ZHAO LINA# (Wed Jan 27 2010 - 06:28:38 PST)
1. winmail.dat (0 bytes)
[AMBER] disulfide bond error in the xleap jacky zhao (Fri Jan 29 2010 - 22:39:02 PST)
1. leap.log (79097 bytes)

Amber Archive Jan 2010 by messages with attachments