Amber Archive Aug 2001: By Thread

questions for group specification... backy_at_ibms.sinica.edu.tw (Wed Aug 01 2001 - 02:11:59 PDT)
Gibbs and cutoff! PRADIPTA Bandyopadhyay (Sat Aug 04 2001 - 15:23:30 PDT)
varying cartesian restraint Raik Grunberg (Sun Aug 05 2001 - 02:48:28 PDT)
Model(l)ing 2001 in Erlangen/Germany: Bursaries and Awards available! Harald Lanig (Mon Aug 06 2001 - 06:04:51 PDT)
water molecules in a periodic box Giulio Rastelli (Mon Aug 06 2001 - 10:03:41 PDT)
Leap and parm/pert! PRADIPTA Bandyopadhyay (Mon Aug 06 2001 - 16:45:00 PDT)
Can amber calculate the gibbs perturb energy when a ligand added a group sxzheng (Mon Aug 06 2001 - 20:26:13 PDT)
reflector back on. jim caldwell (Tue Aug 14 2001 - 12:30:19 PDT)
Linux-cluster performance Florian Barth (Wed Aug 15 2001 - 06:07:51 PDT)
- Re: Linux-cluster performance Jarrod Smith (Wed Aug 15 2001 - 10:23:09 PDT)
- box size tianxiao young (Wed Aug 15 2001 - 21:31:40 PDT)
- Protonated Water Dr. Andrea Cavalli (Thu Aug 16 2001 - 00:37:33 PDT)
- dual K7 (was Re: Linux-cluster performance) Tru Huynh (Mon Aug 20 2001 - 12:09:18 PDT)
- changing the g77 optimization for compiling sander_classic Margaret Cheung (Mon Aug 20 2001 - 13:08:30 PDT)
- adding atoms and amino acid residues Marcela Madrid (Mon Aug 20 2001 - 14:52:31 PDT)
  - Re: adding atoms and amino acid residues Omer Katzenelson (Tue Aug 21 2001 - 14:25:31 PDT)
  - CARNAL Omer Katzenelson (Tue Aug 21 2001 - 18:27:54 PDT)
  - Utilizing Amber6 on Linux Cluster Scott E. Boesch (Wed Aug 22 2001 - 07:24:42 PDT)
    - Re: Utilizing Amber6 on Linux Cluster David Konerding (Wed Aug 22 2001 - 08:31:56 PDT)
    - Re: Utilizing Amber6 on Linux Cluster Margaret Cheung (Wed Aug 22 2001 - 10:23:40 PDT)
    - Re: Utilizing Amber6 on Linux Cluster Jung-Hsing Lin (Wed Aug 22 2001 - 10:49:25 PDT)
    - Re: Utilizing Amber6 on Linux Cluster David Konerding (Wed Aug 22 2001 - 12:41:13 PDT)
    - Analysising the results Rozita Dara (Wed Aug 22 2001 - 13:03:28 PDT)
    - defining states in Gibbs Sophia Kondratova (Wed Aug 22 2001 - 12:39:35 PDT)
    - problem using xleap and tleap Rozita Dara (Wed Aug 22 2001 - 10:13:08 PDT)
    - Re: Utilizing Amber6 on Linux Cluster Sanjeev B.S. (Wed Aug 22 2001 - 22:31:58 PDT)
    - ptraj Troy Wymore (Thu Aug 23 2001 - 08:30:23 PDT)
    - Re: ptraj Thomas Cheatham (Thu Aug 23 2001 - 09:36:51 PDT)
    - Error message Rozita Dara (Thu Aug 23 2001 - 10:46:12 PDT)
    - Re: Error message Jung-Hsing Lin (Thu Aug 23 2001 - 10:54:27 PDT)
    - ... error message Rozita Dara (Thu Aug 23 2001 - 12:14:07 PDT)
    - summary: AMBER6 on IBMSP3 Xavier Deupi (Fri Aug 24 2001 - 00:04:19 PDT)
    - How to deal with the little molcule? sxzheng (Fri Aug 24 2001 - 07:48:22 PDT)
    - Error message Rozita Dara (Thu Aug 23 2001 - 08:59:57 PDT)
    - (no subject) Xiaolin Chuang (Thu Aug 23 2001 - 09:00:49 PDT)
    - Re:Re: (to "Xiaolin Chuang") Elsa de Sousa Henriques (Fri Aug 24 2001 - 11:38:05 PDT)
    - ntc in sander6 Xavier Deupi (Sat Aug 25 2001 - 05:08:12 PDT)
    - Mystery protons! Sanjeev B.S. (Sun Aug 26 2001 - 05:03:11 PDT)
    - coordinate resetting ? Guido Hansen (Mon Aug 27 2001 - 01:46:51 PDT)
    - Re: coordinate resetting ? A.Madhumalar (Mon Aug 27 2001 - 05:50:59 PDT)
    - computing order parameters from an MD trajectory Jake Isaacs (Mon Aug 27 2001 - 07:45:58 PDT)
    - L-J mixing rules? Kevin Van Workum (Mon Aug 27 2001 - 09:10:24 PDT)
    - shake tricks? Peter Varnai (Thu Aug 30 2001 - 06:57:00 PDT)
    - residue numbering in dimers and trimers Joseph Nachman (Thu Aug 30 2001 - 09:41:48 PDT)
    - RE: residue numbering in dimers and trimers Bayly, Christopher (Thu Aug 30 2001 - 11:30:47 PDT)
    - Re: residue numbering in dimers and trimers samantha hughes (Fri Aug 31 2001 - 00:43:55 PDT)
    - NPT restart problem Sanjeev B.S. (Fri Aug 31 2001 - 03:16:37 PDT)
    - movie for subset of atoms Anton B. Guliaev (Thu Aug 30 2001 - 13:42:14 PDT)
    - Re: movie for subset of atoms Florian Barth (Thu Aug 30 2001 - 14:16:00 PDT)
    - RE: movie for subset of atoms DeLano, Warren (Thu Aug 30 2001 - 14:32:53 PDT)
    - Newton-Raphson minimization! Dat H. Nguyen (Thu Aug 30 2001 - 16:20:56 PDT)
    - torsional profile Giulio Rastelli (Thu Aug 30 2001 - 17:02:39 PDT)
- changing the g77 optimization for compiling sander_classic Margaret Cheung (Mon Aug 20 2001 - 17:25:41 PDT)
Combination of two solvents Alexander Steudle (Wed Aug 15 2001 - 07:58:15 PDT)
charge on protein Giulio Rastelli (Wed Aug 15 2001 - 10:08:43 PDT)
Re: adding atoms and amino acid residues Bill Ross (Mon Aug 20 2001 - 18:10:48 PDT)
- Re: adding atoms and amino acid residues Raik Grunberg (Tue Aug 21 2001 - 01:20:50 PDT)
- density in equilibration? Shixiang Yan (Tue Aug 21 2001 - 09:38:35 PDT)
Re: problem using xleap and tleap Bill Ross (Wed Aug 22 2001 - 10:23:27 PDT)
Re: residue numbering in dimers and trimers Bill Ross (Thu Aug 30 2001 - 10:00:44 PDT)
question Jie Guo (Thu Aug 30 2001 - 10:58:37 PDT)
NPT restart problem Sanjeev B.S. (Fri Aug 31 2001 - 06:19:48 PDT)
SPC water Jerry wu (Fri Aug 31 2001 - 07:01:32 PDT)

Amber Archive Aug 2001 By Thread