Amber Archive May 2000: By Thread

anions of NAB's Dayle Smith (Mon May 01 2000 - 09:17:11 PDT)
Baic MD simulation Victor Pham (Tue May 02 2000 - 16:02:44 PDT)
transition metal ions parameters Francesca Mocci (Thu May 04 2000 - 07:46:45 PDT)
Side chain mobility Aleksandras Gutmanas (Thu May 04 2000 - 08:28:13 PDT)
H+ parameters Pascal Bonnet (Thu May 04 2000 - 18:56:21 PDT)
pressureS Victor Pham (Fri May 05 2000 - 10:57:24 PDT)
problems in sander devi rvel (Sun May 07 2000 - 00:53:52 PDT)
- Re: problems in sander Yong Duan (Sun May 07 2000 - 13:11:36 PDT)
- (no subject) Michal Otyepka (Mon May 08 2000 - 02:02:31 PDT)
- babel François Yves Dupradeau (Mon May 08 2000 - 04:06:51 PDT)
- Density value in sander output mariang98 (Mon May 08 2000 - 14:57:37 PDT)
- protonated adenine and cytosine? Alan Cheng (Mon May 08 2000 - 20:09:40 PDT)
- regarding edit option Prem Raj Joseph (Tue May 09 2000 - 11:19:30 PDT)
- 6-12 nonbonded function Karl N. Kirschner (Tue May 09 2000 - 11:17:45 PDT)
- AMBER 6 and residual dipolar coupling Fabio Arnesano (Wed May 10 2000 - 01:36:25 PDT)
  - Re: AMBER 6 and residual dipolar coupling Vickie Tsui (Wed May 10 2000 - 10:04:11 PDT)
  - Looking for a PREP input file Jose Ramon Blas (Thu May 11 2000 - 10:33:28 PDT)
- carnal script Peter Gannett (Wed May 10 2000 - 06:37:37 PDT)
Re: problems in sander Bill Ross (Sun May 07 2000 - 01:54:57 PDT)
Re: a6 sander gb breaks on smallmol Jarrod Smith (Thu May 11 2000 - 15:42:03 PDT)
pdb files Victor Pham (Thu May 11 2000 - 17:09:11 PDT)
d-uridine Friedrich A. Gollmick (Fri May 12 2000 - 03:17:41 PDT)
TAUP Surjit Dixit (Fri May 12 2000 - 12:18:35 PDT)
question about imaging rathinavelan thenmalarchelvi (Sat May 13 2000 - 14:45:30 PDT)
Amber6 documentation jim caldwell (Tue May 16 2000 - 11:37:49 PDT)
question on expanding nphb Margaret Cheung (Tue May 16 2000 - 18:27:31 PDT)
Hello Mao Xiang (Wed May 17 2000 - 01:13:42 PDT)
- Re: Hello David Case (Wed May 17 2000 - 07:43:47 PDT)
- [pavan@bnpi.com: 'Coordinate resetting in amber6'] David Case (Wed May 17 2000 - 15:08:18 PDT)
Re: [pavan@bnpi.com: 'Coordinate resetting in amber6'] Michael Crowley (Wed May 17 2000 - 16:08:26 PDT)
equilibration of CH2Cl2 box Jesús Gómez (Thu May 18 2000 - 05:30:32 PDT)
gibbs in sodium Mao Xiang (Thu May 18 2000 - 19:06:48 PDT)
AMBER installation kian kani (Fri May 19 2000 - 10:27:37 PDT)
amber parameters Mao Xiang (Fri May 19 2000 - 21:07:56 PDT)
3-botton emulat Yunfeng Hu (Mon May 22 2000 - 13:10:23 PDT)
Compile Problem ptraj with PGI compiler Kouji Hauyama (Mon May 22 2000 - 19:45:10 PDT)
sander compile error with MPICH compiled by PGI compiler Kouji Hauyama (Tue May 23 2000 - 05:34:15 PDT)
Re: Sander: crash if nmropt=1. HELP!!!!!!! David Konerding (Tue May 23 2000 - 10:33:20 PDT)
Restraint and topology mismatch error Rebecca Perlow (Tue May 23 2000 - 11:58:07 PDT)
Crosslink in Leap Jeffrey P. Jones (Tue May 23 2000 - 12:15:06 PDT)
Re: Crosslink in Leap Bill Ross (Tue May 23 2000 - 22:28:37 PDT)
Re: DOUBT IN PTRAJ DOCUMENTATION A.Madhumalar (Wed May 24 2000 - 00:05:12 PDT)
Re: DOUBT IN AMBER5 PTRAJ DOCUMENTATION (fwd) A.Madhumalar (Wed May 24 2000 - 03:53:32 PDT)
Re: Help with polynucleotide building David Case (Wed May 24 2000 - 15:53:24 PDT)
dummy atom as anchor in gibbs ? Terreux Raphael (Thu May 25 2000 - 14:53:43 PDT)
soft repulsion option Cristina Dezi (Fri May 26 2000 - 01:15:01 PDT)
4096wat running problem Kouji Hauyama (Fri May 26 2000 - 07:09:42 PDT)
- Re: 4096wat running problem David Konerding (Fri May 26 2000 - 08:02:18 PDT)
  - Re: 4096wat running problem Kouji Hayama (Fri May 26 2000 - 08:36:50 PDT)
  - Re: 4096wat running problem Michael Crowley (Fri May 26 2000 - 09:22:10 PDT)
Re: Periodic boundary condition jim caldwell (Fri May 26 2000 - 10:28:50 PDT)
Simulation of DNA Marcela Madrid (Fri May 26 2000 - 10:58:19 PDT)
Periodic boundary condition Prem Raj Joseph (Fri May 26 2000 - 11:36:41 PDT)
4096wat runnning problem Kouji Hauyama (Sat May 27 2000 - 05:41:24 PDT)
center of mass with gibbs ? Terreux Raphael (Mon May 29 2000 - 15:46:12 PDT)
AMBER 6.0 on parallel IBM SP system. Gerard GIL (Tue May 30 2000 - 07:09:07 PDT)
- Shake and a new computer system R. M. Fesinmeyer (Tue May 30 2000 - 10:50:25 PDT)
- improvements to force field Marcela Madrid (Tue May 30 2000 - 13:02:35 PDT)
- What does this mean? Renxiao Wang (Tue May 30 2000 - 16:46:03 PDT)
  - ROAR-CP calculation on axp machines HIRAO (Tue May 30 2000 - 19:23:02 PDT)
  - energy decomposition along MD trajectory Michal Otyepka (Wed May 31 2000 - 05:59:36 PDT)
  - md toolchest Cui Guanglei (Wed May 31 2000 - 10:16:32 PDT)
  - inquire about the cost of the license. Margaret Cheung (Wed May 31 2000 - 10:54:13 PDT)
  - rms in rdparm Frank Yan (Wed May 31 2000 - 15:38:51 PDT)
  - Visualization Garrett W Grahek (Wed May 31 2000 - 16:50:57 PDT)
  - RESP Pascal Bonnet (Wed May 31 2000 - 19:27:34 PDT)

Amber Archive May 2000 By Thread