From: A.Madhumalar <>
Date: Wed 24 May 2000 11:05:12 +0400 (RET)

 Dear sir,
        I am using AMBER5 for molecular dynamics of DNA.I wanted to use
 grid option in ptraj documentation for hydration analysis,before that i
 was trying to do rmsfit with input is like this
 ptraj parmtop << EOF
 trajin mdcrd199 1 10
 trajin mdcrd198 1 10
 trajin restrt199
 traj.out fixed.traj
 rms previous
 center origin
         it is not at all reading the input file.And also in rdparm if
 i give mainmenu option as analyze it is saying as not found in tokenlist.
 could you please suggest me some ways to utilise these analysis
 programs.Thanks in advance.


James W. Caldwell (voice) 415-476-8603
Department of Pharmaceutical Chemistry (fax) 415-502-1411
Mail Stop 0446 (email)
513 Parnassus Avenue
University of California
San Francisco, CA 94143-0446
Received on Wed May 24 2000 - 00:05:12 PDT
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