Dear sir,
I am using AMBER5 for molecular dynamics of DNA.I wanted to use
grid option in ptraj documentation for hydration analysis,before that i
was trying to do rmsfit with rdparm.my input is like this
ptraj parmtop << EOF
trajin mdcrd199 1 10
trajin mdcrd198 1 10
trajin restrt199
traj.out fixed.traj
rms previous
image
center origin
go
EOF
it is not at all reading the input file.And also in rdparm if
i give mainmenu option as analyze it is saying as not found in tokenlist.
could you please suggest me some ways to utilise these analysis
programs.Thanks in advance.
sincerely,
madhu
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James W. Caldwell (voice) 415-476-8603
Department of Pharmaceutical Chemistry (fax) 415-502-1411
Mail Stop 0446 (email) caldwell_at_heimdal.ucsf.edu
513 Parnassus Avenue
University of California
San Francisco, CA 94143-0446
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Received on Wed May 24 2000 - 00:05:12 PDT
