Amber Archive Aug 2020 by messages with attachments
263 messages
:
Starting
Fri Jul 31 2020 - 14:30:02 PDT,
Ending
Mon Aug 31 2020 - 13:00:04 PDT
This period
:
Most recent messages
sort by
: [
thread
] [
author
] [
date
] [
subject
] [ attachment ]
[AMBER] open valence problem
Ayesha Fatima
(Tue Aug 04 2020 - 07:34:19 PDT)
bras.mol2
(7661 bytes)
Mol_red1.pdb.pdb
(6194 bytes)
[AMBER] weird energy histograms with REMD
Diego Morone
(Wed Aug 05 2020 - 05:35:04 PDT)
remd.pdf
(4110 bytes)
Re: [AMBER] open valence problem
Ayesha Fatima
(Thu Aug 06 2020 - 04:10:35 PDT)
image.png
(238993 bytes)
frcmod.unknown
(516 bytes)
frcmod.correspondence
(1132 bytes)
frcmod.known
(5708 bytes)
bras.frcmod
(6421 bytes)
[AMBER] Fatal error on running GAMESS for parameters of FE ion
gagandeep singh
(Thu Aug 06 2020 - 08:59:52 PDT)
FE_small_opt.inp
(665 bytes)
FE_small_opt.log
(276605 bytes)
[AMBER] Problem about ADP-Protein complex simulation
neildancer.sina.com
(Sat Aug 08 2020 - 06:58:49 PDT)
adp_bcc.mol2
(4570 bytes)
pic1.png
(296533 bytes)
[AMBER] Assigning new velocities from Maxwell-Boltzmann distribution (ntx = 1)
German P. Barletta
(Sun Aug 09 2020 - 13:43:20 PDT)
0pdt.out
(80878 bytes)
[AMBER] Time numbering problem with constant-pH simulations
Jonee Lillard
(Sat Aug 15 2020 - 07:31:14 PDT)
prod.cpH.in.txt
(362 bytes)
Re: [AMBER] Error searching for compatible GPU
Camila Clemente
(Sun Aug 16 2020 - 09:00:53 PDT)
r_500_eq.mdout
(3399 bytes)
r_500_eq_2.mdout
(3399 bytes)
[AMBER] no collective variables output for infe=1 and abfqmmm
FLORA, JOSEPH
(Mon Aug 17 2020 - 18:52:20 PDT)
Run.abfqmmm_dmpoh_md_pmd
(2577 bytes)
disang.cv
(312 bytes)
Re: [AMBER] 转发: Amber20 install problem (Geng Dong)
David A Case
(Wed Aug 19 2020 - 19:00:31 PDT)
test.log
(1147 bytes)
[AMBER] Antechamber and parmchk2 problem in case of processing mol2 input files
Marek Maly
(Thu Aug 20 2020 - 03:21:08 PDT)
ANTECHAMBER_PARMCHK_PROBLEM.zip
(105608 bytes)
[AMBER] novel residue from Glutamine
alex rayevsky
(Tue Aug 25 2020 - 05:24:29 PDT)
glu.png
(35282 bytes)
Re: [AMBER] Time numbering problem with constant-pH simulations
Jonee Lillard
(Tue Aug 25 2020 - 08:30:35 PDT)
md4.test.cpin.txt
(11082 bytes)
Re: [AMBER] Help for building cross linking polymer using graphic antechamber
Pinky Mazumder
(Wed Aug 26 2020 - 13:17:45 PDT)
Lignin.png
(119395 bytes)
[AMBER] Unable to complete heating stage
Ramanathan Rajesh
(Thu Aug 27 2020 - 10:37:54 PDT)
min.in
(151 bytes)
heat.in
(340 bytes)
heat.out
(8629 bytes)
Re: [AMBER] Unable to complete heating stage
Ramanathan Rajesh
(Thu Aug 27 2020 - 10:56:05 PDT)
min.out
(50931 bytes)
heat.out
(8629 bytes)
job.sh
(497 bytes)
[AMBER] Fw: covalent molecule and modified residue parameters
Sarah Jane
(Thu Aug 27 2020 - 12:44:59 PDT)
HAR.cif
(7007 bytes)
HAR.pdb
(1883 bytes)
[AMBER] "Atom does not have a type" despite adding .frcmod parameters
Erika Davidoff
(Thu Aug 27 2020 - 12:56:25 PDT)
ccl2_fragH.pdb
(2721 bytes)
tleap_initialsetup.in
(527 bytes)
ccl2.pdb
(86102 bytes)
ccl2.frcmod
(6394 bytes)
Last message date
:
Mon Aug 31 2020 - 13:00:04 PDT
Archived on
: Wed Dec 11 2024 - 05:55:51 PST
263 messages
sort by
: [
thread
] [
author
] [
date
] [
subject
] [ attachment ]
Custom Search