Amber Archive Aug 2015: by messages with attachments

[AMBER] Implicit solvent simulation is unexpectedly slow 浅井賢 (Sun Aug 02 2015 - 01:21:43 PDT)
1. md1.in (8604 bytes)
2. difference.txt (5504 bytes)
[AMBER] How to construct the Ala3 peptide shown in this picture? lipengfei_mail (Tue Aug 04 2015 - 05:12:38 PDT)
1. Ala3.png (81696 bytes)
[AMBER] MMPBSA_Ras-Raf complex tutorial Ruchika Bhat (Wed Aug 05 2015 - 06:48:17 PDT)
1. FINAL_RESULTS_MMPBSA.dat (7568 bytes)
[AMBER] RED Server for Altered Amino Acid Edward Kalkreuter (Wed Aug 05 2015 - 19:56:11 PDT)
1. Project.config.txt (20366 bytes)
2. Mol_red1.pdb (2305 bytes)
Re: [AMBER] NaN with pmemd.cuda Joseph Baker (Thu Aug 06 2015 - 11:59:32 PDT)
1. boxinfo.dat.gz (313803 bytes)
[AMBER] cpptraj - RMSD Amber mail (Sat Aug 08 2015 - 23:51:02 PDT)
1. 61.png (17692 bytes)
[AMBER] pH-REMD theory whb (Wed Aug 12 2015 - 23:58:47 PDT)
1. image001.png (8425 bytes)
Re: [AMBER] cpptraj frames clustering limit Gaurao Dhoke (Thu Aug 13 2015 - 01:28:01 PDT)
1. cluster.log (9975 bytes)
2. clustering.in (1008 bytes)
[AMBER] Imaging and connectivity error Harmeet Kaur (Thu Aug 13 2015 - 04:27:24 PDT)
1. error.png (372092 bytes)
[AMBER] Job submission script for SGE Himansu (Thu Aug 13 2015 - 16:50:59 PDT)
1. AMBER.sh (2264 bytes)
[AMBER] The protein is Leaving the water box! Amber mail (Thu Aug 13 2015 - 17:36:59 PDT)
1. leaving_the_WB.png (141187 bytes)
2. heating.png (11598 bytes)
Re: [AMBER] The protein is Leaving the water box! Amber mail (Fri Aug 14 2015 - 05:11:25 PDT)
1. Screenshot.png (163148 bytes)
Re: [AMBER] AMBER Digest, Vol 1311, Issue 1 Robin Jain (Sat Aug 15 2015 - 01:58:47 PDT)
1. meoh.frcmod (823 bytes)
2. meoh.prepin (785 bytes)
[AMBER] Help needed regarding simulating Lipopolysaccharide Mrinda Jones (Mon Aug 17 2015 - 03:41:39 PDT)
1. Lipopoly.pdb.pdb (22586 bytes)
[AMBER] RESP fitting Mahmood Jasim (Wed Aug 19 2015 - 05:46:21 PDT)
1. resp.in (744 bytes)
2. resp.out (11720 bytes)
3. Run.resp (2832 bytes)
4. resp_cap.in (848 bytes)
5. resp_cap.out (12267 bytes)
6. SCH3_cap.qin (613 bytes)
Re: [AMBER] Total interaction energy between monomeric units of a dimer Hector A. Baldoni (Thu Aug 20 2015 - 05:09:43 PDT)
1. shell.in (578 bytes)
2. shell.out (7070 bytes)
[AMBER] hydrogen mass repartitioning visualization in chimera George Green (Thu Aug 20 2015 - 16:49:14 PDT)
1. 50_.png (401949 bytes)
Re: [AMBER] hpc error Damiano Spadoni (Fri Aug 28 2015 - 04:37:17 PDT)
1. amber_script (372 bytes)
2. input_file (447 bytes)
3. output (280719 bytes)
4. RSTa.dist (8259 bytes)

Amber Archive Aug 2015 by messages with attachments