Amber Archive Aug 2000: By Thread

Ca2+ parameters Jarrod Smith (Tue Aug 01 2000 - 16:44:44 PDT)
- Re: Ca2+ parameters Kouji Hayama (Tue Aug 01 2000 - 23:20:06 PDT)
- animation of normal modes Scott Boesch (Thu Aug 03 2000 - 13:26:34 PDT)
Re: How to make pdb"q" files easily? Bill Ross (Fri Aug 04 2000 - 10:33:58 PDT)
Profec wentaofu (Fri Aug 04 2000 - 11:17:56 PDT)
a question about the setting to contrain kinetic energy Margaret Cheung (Sat Aug 05 2000 - 23:04:43 PDT)
ChemInt2000 hotel rooms Steve Heller (Sun Aug 06 2000 - 14:59:49 PDT)
isoxazole force constants Eric Hu (Mon Aug 07 2000 - 12:30:11 PDT)
Did MM/PBSA runs on linux also? Lawrence Tsang (Mon Aug 07 2000 - 21:42:39 PDT)
Where to download mm5_car1.Z for example1 of mmpbsa? Lawrence Tsang (Mon Aug 07 2000 - 21:59:34 PDT)
Ph.D. thesis in Strasbourg-France Didier Rognan (Tue Aug 08 2000 - 02:11:10 PDT)
Myrinet + Beowulf for AMBER? Jarrod Smith (Tue Aug 08 2000 - 07:19:54 PDT)
- RE: Myrinet + Beowulf for AMBER? Kouji Hayama (Tue Aug 08 2000 - 22:11:41 PDT)
- Problem with PME test Jithesh P.V (Thu Aug 10 2000 - 05:01:55 PDT)
  - Re: Problem with PME test Jithesh P.V (Fri Aug 11 2000 - 09:04:02 PDT)
  - Re: Problem with PME test Michael Crowley (Fri Aug 11 2000 - 12:02:56 PDT)
  - compiling AMBER5.0 on Beowolf cluster Andrew Petersen (Fri Aug 11 2000 - 13:39:43 PDT)
    - Re: compiling AMBER5.0 on Beowolf cluster Juergen Suehnel (Sat Aug 12 2000 - 03:52:27 PDT)
    - MACHINE file for DEC Alpha! Jennifer Bui (Tue Aug 15 2000 - 00:40:55 PDT)
    - Re: MACHINE file for DEC Alpha! Thomas A. Spraggins (Tue Aug 15 2000 - 04:59:51 PDT)
    - Re: MACHINE file for DEC Alpha! jim caldwell (Tue Aug 15 2000 - 07:30:21 PDT)
    - PME with charged system Marcela Madrid (Tue Aug 15 2000 - 07:31:04 PDT)
    - Re: PME with charged system David Small (Tue Aug 15 2000 - 19:17:45 PDT)
    - AMBER installation Dayle Smith (Wed Aug 16 2000 - 11:55:27 PDT)
    - NAD parameters Raphael Buencamino (Wed Aug 16 2000 - 17:46:37 PDT)
    - cobalt DOIZI Denis 98775 (Thu Aug 17 2000 - 00:31:43 PDT)
    - dielectric constant David Small (Thu Aug 17 2000 - 12:10:25 PDT)
    - Re: dielectric constant Soaring Bear (Sat Aug 19 2000 - 08:03:43 PDT)
    - AMBER 5.01 on Linux Ramon Garduno (Fri Aug 18 2000 - 11:53:56 PDT)
    - Oct box and ptraj Robert Matthew Fesinmeyer (Mon Aug 21 2000 - 11:12:50 PDT)
    - Re: AMBER 5.01 on Linux Ramon Garduno (Thu Aug 24 2000 - 13:02:49 PDT)
    - absoft and AMBER6 Jarrod Smith (Thu Aug 24 2000 - 19:33:00 PDT)
    - minimization from the average structure of MD simulation Minmin Wang (Tue Aug 29 2000 - 09:25:01 PDT)
    - Re: PME with charged system darden (Fri Aug 18 2000 - 21:52:26 PDT)
    - need help nurindah wulandari (Tue Aug 15 2000 - 07:43:48 PDT)
  - analysis tool for water and stacking? Frank Yan (Fri Aug 11 2000 - 15:40:32 PDT)
- MM-PBSA trajectory file samantha hughes (Fri Aug 11 2000 - 07:28:48 PDT)
- reassigning temp. during MD Raik Gruenberg (Fri Aug 11 2000 - 08:03:06 PDT)
  - Re: reassigning temp. during MD Robert Matthew Fesinmeyer (Mon Aug 21 2000 - 15:20:53 PDT)
    - Re: reassigning temp. during MD Carlos Simmerling (Wed Aug 23 2000 - 09:41:17 PDT)
  - processing of carnal output Michal Otyepka (Tue Aug 22 2000 - 03:23:06 PDT)
  - how to justify the size of a periodic box. Margaret Cheung (Tue Aug 22 2000 - 16:47:41 PDT)
  - MDEN output file format Fabrice YERLY (Wed Aug 23 2000 - 03:14:01 PDT)
  - sysdir Nelson Teixeira Brito (Wed Aug 23 2000 - 08:20:00 PDT)
    - Re: sysdir jim caldwell (Wed Aug 23 2000 - 10:30:22 PDT)
    - Re: sysdir Chuck Schneider (Wed Aug 23 2000 - 11:01:07 PDT)
    - shared mem David Small (Wed Aug 23 2000 - 15:03:40 PDT)
    - Parm99 Jie Guo (Thu Aug 24 2000 - 09:03:21 PDT)
    - Re: sysdir Nelson Teixeira Brito (Thu Aug 24 2000 - 02:05:02 PDT)
urgent sohail qamar (Tue Aug 08 2000 - 07:21:16 PDT)
charges for new compound Marcela Madrid (Tue Aug 08 2000 - 08:03:54 PDT)
Re: Amber6 on a ES40/4CPUs jim caldwell (Tue Aug 08 2000 - 08:20:49 PDT)
Re: two questions: (1)dihedral, (2) movies Carlos Simmerling (Tue Aug 15 2000 - 08:15:45 PDT)
- Re: two questions: (1)dihedral, (2) movies Frank Yan (Tue Aug 15 2000 - 08:47:59 PDT)
- Re: two questions: (1)dihedral, (2) movies samantha hughes (Tue Aug 15 2000 - 09:12:41 PDT)
vdw parameter Todd J. Minehardt (Tue Aug 15 2000 - 09:44:50 PDT)
Annealing with rigid body Pornthep Sompornpisut (Tue Aug 15 2000 - 12:29:34 PDT)
Re: Periodic Boundary Condition Kouji Hayama (Thu Aug 24 2000 - 00:09:40 PDT)
anal.in format J. Bryan Buckalew (Thu Aug 24 2000 - 08:52:21 PDT)
Re: Questions on the definition of parameters jim caldwell (Tue Aug 29 2000 - 12:57:57 PDT)
Brief courses on AMBER 6 Michael Cooney (Wed Aug 30 2000 - 08:54:37 PDT)
- Re: Brief courses on AMBER 6 David Case (Wed Aug 30 2000 - 09:48:16 PDT)
  - Re: Brief courses on AMBER 6 Jarrod Smith (Wed Aug 30 2000 - 10:24:20 PDT)
  - "Protonate" errors Michael Cooney (Wed Aug 30 2000 - 11:40:53 PDT)
  - Benchmarking AMD CPUS Yongxing Liu (Thu Aug 31 2000 - 03:14:36 PDT)
  - rdparm/ptraj Tuomo Laitinen (Thu Aug 31 2000 - 05:50:59 PDT)
    - Re: rdparm/ptraj Thomas E. Cheatham, III (Thu Aug 31 2000 - 11:03:07 PDT)
manganese ions Natasja Brooijmans (Thu Aug 31 2000 - 15:23:24 PDT)

Amber Archive Aug 2000 By Thread