need help

From: nurindah wulandari <wulan_99_at_student.undip.ac.id>
Date: Tue 15 Aug 2000 07:43:48 -0700 (PDT)

</x-html>From ???.??? Wed Aug 16 10:14:15 2000
Received: from doves.llnl.gov (doves.llnl.gov [128.115.17.203])
          by popcorn.llnl.gov (8.8.8/LLNL-3.0.2/pop.llnl.gov-5.2) with ESMTP
          id IAA28776 for <barsky1.popcorn.llnl.gov>; Tue, 15 Aug 2000 08:02:53 -0700 (PDT)
Received: from pierce.llnl.gov (pierce.llnl.gov [128.115.41.100] (may be forged))
        by doves.llnl.gov (8.9.3/LLNL-4.0) with ESMTP id IAA145617
        for <barsky.doves.llnl.gov>; Tue, 15 Aug 2000 08:02:53 -0700 (PDT)
Received: from giants.llnl.gov (giants.llnl.gov [128.115.249.1])
          by pierce.llnl.gov (8.8.8/LLNL-3.0.2/llnl.gov-5.1) with ESMTP
          id IAA12759; Tue, 15 Aug 2000 08:02:53 -0700 (PDT)
Received: from socrates.cgl.ucsf.edu (socrates.cgl.ucsf.edu [128.218.27.3])
        by giants.llnl.gov (8.9.3/8.9.3/LLNL-Giants-4.1) with ESMTP id IAA13735;
        Tue, 15 Aug 2000 08:02:52 -0700 (PDT)
Received: from cgl.ucsf.edu (cgl.ucsf.edu [128.218.27.20])
        by socrates.cgl.ucsf.edu (8.9.3/8.9.3/GSC1.6) with ESMTP id HAA110811
        for <amber-users.socrates.cgl.ucsf.edu>; Tue, 15 Aug 2000 07:43:23 -0700 (PDT)
Received: from mail.virginia.edu (mail.Virginia.EDU [128.143.2.9])
        by cgl.ucsf.edu (8.9.3/8.9.3/GSC1.7) with SMTP id HAA78776
        for <amber.cgl.ucsf.edu>; Tue, 15 Aug 2000 07:43:22 -0700 (PDT)
Received: from neon.mail.virginia.edu by mail.virginia.edu id aa24603;
          15 Aug 2000 10:43 EDT
Received: from gd2f95.virginia.edu (bootp-34-182.bootp.Virginia.EDU [128.143.34.182])
        by neon.mail.Virginia.EDU (8.9.3/8.9.3) with SMTP id KAA00466
        for <amber.cgl.ucsf.edu>; Tue, 15 Aug 2000 10:42:08 -0400 (EDT)
From: gail louise dempsey <gd2f.cms.mail.virginia.edu>
To: amber.cgl.ucsf.edu
Subject: two questions: (1)dihedral, (2) movies
Message-ID: <SIMEON.10008151028.C.gd2f95.config.mail.virginia.edu>
Date: Tue, 15 Aug 2000 10:49:28 -0400 (Eastern Daylight Time)
Priority: NORMAL
X-Mailer: Simeon for Win32 Version 4.1.4 Build (40)
X-Authentication: IMSP
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; CHARSET=US-ASCII
X-UIDL: 5ffc5a0db6a1836c97d91f61c00943b8

1. Where do I specify improper dihedral parameters?
Apparently this is what I need to do to keep sp2
carbons planar and trans or cis.

2. What visualization package is the best for viewing AMBER
output? I would like to view the output as still-frames,
or a movie. (I have been using MovieMol for some
applications, but is there something that reads AMBER
output directly?)

- Gail
Received on Tue Aug 15 2000 - 07:43:48 PDT
Custom Search