Amber Archive Nov 2015 by messages with attachments

448 messages: Starting Sat Oct 31 2015 - 12:30:03 PDT, Ending Mon Nov 30 2015 - 21:00:02 PST
This period: Most recent messages
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Re: [AMBER] ions cannot be viewed in gaussview Martina Devi (Sat Oct 31 2015 - 12:12:20 PDT)
1. a_min.pdb (15913 bytes)
Re: [AMBER] rMD || Distance-Restrained Molecular Dynamics Refinement in Explicit Solvent (AMBER) -- SCRIPT V. Kumar (Mon Nov 02 2015 - 07:12:13 PST)
1. anneal.in (2187 bytes)
Re: [AMBER] rMD || Distance-Restrained Molecular Dynamics Refinement in Explicit Solvent (AMBER) -- SCRIPT V. Kumar (Mon Nov 02 2015 - 09:28:37 PST)
1. image.png (173139 bytes)
2. paper1.png (403084 bytes)
3. gb_anneal_200ps.in (2321 bytes)
[AMBER] PLUMED patching with AMBER Sanjib Paul (Sun Nov 08 2015 - 21:24:45 PST)
1. Screenshot.png (551185 bytes)
Re: [AMBER] QM/MM Umbrella Mahmood Jasim (Mon Nov 09 2015 - 07:05:31 PST)
1. image.png (5682 bytes)
Re: [AMBER] MMPBSA Electrostatic energy Asma Abro 28-FBAS/MSBI/F09 (Wed Nov 11 2015 - 08:58:09 PST)
1. FINAL_RESULTS_MMPBSA.dat (7325 bytes)
Re: [AMBER] Lipid14 simulation :MC Barostat vs Berendsen Barostat and NTR=1 Himanshu Joshi (Fri Nov 13 2015 - 03:47:37 PST)
1. com_npt.jpg (540440 bytes)
Re: [AMBER] PLUMED patching with AMBER Sanjib Paul (Sat Nov 14 2015 - 04:57:51 PST)
1. modulefile (1417 bytes)
Re: [AMBER] urea force field Jason Swails (Thu Nov 19 2015 - 07:29:30 PST)
1. urea.off (1868 bytes)
Re: [AMBER] Distorted and Failed Phosphate Simulations Karl Kirschner (Fri Nov 20 2015 - 01:36:16 PST)
1. oh-p5-oh.pdf (6197 bytes)
2. p5-o.pdf (6297 bytes)
[AMBER] Error message while running alanine dipeptide tutorial (minimization) Nikolay N. Kuzmich (Fri Nov 27 2015 - 00:28:39 PST)
1. mdread1.F90 (34995 bytes)
[AMBER] Fwd: Replica exchange problem in visualization and interpretation of the MD out files maryam azimzadehirani (Fri Nov 27 2015 - 02:58:09 PST)
1. remd.rst.047 (56473 bytes)
2. remd.rst.048 (56473 bytes)
3. EGF_leap2.prmtop (331773 bytes)
Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization) Nikolay N. Kuzmich (Mon Nov 30 2015 - 03:39:41 PST)
1. 01_Min.in (110 bytes)
[AMBER] zinc ordination 2-CYM 2-HID || CYM-CYM covalent bond V. Kumar (Mon Nov 30 2015 - 09:00:21 PST)
1. zinc_cordination.png (76414 bytes)