Re: [AMBER] Error message while running alanine dipeptide tutorial (minimization)

From: Nikolay N. Kuzmich <nnkuzmich.gmail.com>
Date: Mon, 30 Nov 2015 14:39:41 +0300

Dear Bill, David and other Amber users,

I enclose a copy of the 01_Min.in file.
How should it be formatted correctly?..
Also an extra blank line at the end mdread1.F90 file was added,
but it didn't help.
So what can be done next?..
I am a beginner at Amber and compiling, etc.
so hope for your empathy.

Kind regards,
Nick

2015-11-27 11:28 GMT+03:00 Nikolay N. Kuzmich <nnkuzmich.gmail.com>:

> Dear Amber users,
>
> When I launched minimization procedure in course of the alanine dipeptide
> tutorial
> I have received an error message:
>
> linux-0bye nikolay/Tutorial# $AMBERHOME/bin/sander -O -i 01_Min.in -o
> 01_Min.out -p prmtop -c inpcrd -r 01_Min.rst -inf 01_Min.mdinfo
> At line 668 of file mdread1.F90 (unit = 5, file = '01_Min.in')
> Fortran runtime error: End of file
> linux-0bye nikolay/Tutorial#
>
> I also have attached mdread1.F90 file which contains FATAL ERROR messages
> in it.
> Please tell me how could I fix it.
>
> Kind regards,
> Nick
>
> Nikolay Kuzmich, PhD
> Department of Drug Safety
> Research Institute of Influenza
> WHO National Influenza Centre of Russia
> 197376 Saint-Petersburg
> http://www.influenza.spb.ru/en/
> 15/17 Professor Popov St.
> Tel.: +78124991559
> Mobile: +79213491750
> e-mail: nikolay.kuzmich.influenza.spb.ru
> nnkuzmich.gmail.com
>


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Received on Mon Nov 30 2015 - 04:00:03 PST
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