Amber Archive Apr 2026 by date

57 messages: Starting Wed Apr 01 2026 - 03:00:02 PDT, Ending Thu Apr 30 2026 - 12:30:02 PDT
This period: Most recent messages
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Wednesday, 1 April 2026
- Re: [AMBER] [EXTERN] Re: Ligand Prepartion Stéphane Téletchéa via AMBER
- Re: [AMBER] [EXTERN] Re: Ligand Prepartion Sarah Witzke via AMBER
Friday, 3 April 2026
- [AMBER] Help needed with MCPB.py for Ru complex ABDELATIF MESSAOUDI via AMBER
Saturday, 4 April 2026
- [AMBER] Installation issue - xray module Frederico Henrique Ferreira via AMBER
- Re: [AMBER] Installation issue - xray module Brent Krueger via AMBER
Monday, 6 April 2026
- Re: [AMBER] Installation issue - xray module Frederico Henrique Ferreira via AMBER
- [AMBER] TI simulation instability with truncated octahedron box Kalandadze, Nino via AMBER
- Re: [AMBER] TI simulation instability with truncated octahedron box Timothy Giese via AMBER
Wednesday, 8 April 2026
- [AMBER] help with non-canonical DNA backbone: 3'-3' and 5'-5' phosphodiester linkages Carmen Cerchia via AMBER
- Re: [AMBER] Help needed with MCPB.py for Ru complex Pengfei Li via AMBER
- Re: [AMBER] Possible caveats in using HMR with ZAFF modeling Pengfei Li via AMBER
Thursday, 9 April 2026
- [AMBER] Restarting simulation error ULPG:Hickey.Niamh via AMBER
- Re: [AMBER] Restarting simulation error David A Case via AMBER
Friday, 10 April 2026
- Re: [AMBER] PhD defense milestone — Amber supported my research David A Case via AMBER
Saturday, 11 April 2026
- [AMBER] Please help fix this input file for qmmm (Amber24, GAMESS v2023) A R via AMBER
- [AMBER] QMMM (Amber24, gamess.2023.R1) A R via AMBER
- Re: [AMBER] QMMM (Amber24, gamess.2023.R1) Goetz, Andreas via AMBER
- [AMBER] Unsubscribe Christopher Jesudason via AMBER
- [AMBER] Unsubscribe Christopher Jesudason via AMBER
Monday, 13 April 2026
- Re: [AMBER] Question about steered MD parameters Baker, Joseph via AMBER
- Re: [AMBER] Question about steered MD parameters Adrian Roitberg via AMBER
Tuesday, 14 April 2026
- [AMBER] Uasge of Nastruct command Priyasha Majee via AMBER
- Re: [AMBER] Uasge of Nastruct command Rodrigo Galindo-Murillo via AMBER
- Re: [AMBER] Uasge of Nastruct command Leung, Jeremy via AMBER
- [AMBER] AMBER and P450 Harshini Karthikeyan via AMBER
- Re: [AMBER] AMBER and P450 Maria Nagan via AMBER
Wednesday, 15 April 2026
- [AMBER] Question regarding the relaxation of a system and the use of HMR saverio lemme via AMBER
- Re: [AMBER] Uasge of Nastruct command Priyasha Majee via AMBER
- Re: [AMBER] Question regarding the relaxation of a system and the use of HMR Adrian Roitberg via AMBER
- Re: [AMBER] Question regarding the relaxation of a system and the use of HMR Timothy Giese via AMBER
- [AMBER] R: Question regarding the relaxation of a system and the use of HMR saverio lemme via AMBER
- [AMBER] R: Question regarding the relaxation of a system and the use of HMR saverio lemme via AMBER
- Re: [AMBER] Uasge of Nastruct command Leung, Jeremy via AMBER
- Re: [AMBER] R: Question regarding the relaxation of a system and the use of HMR Li, Zhen via AMBER
- Re: [AMBER] R: Question regarding the relaxation of a system and the use of HMR Li, Zhen via AMBER
- Re: [AMBER] R: Question regarding the relaxation of a system and the use of HMR Adrian Roitberg via AMBER
Monday, 20 April 2026
- [AMBER] Restart less efficient than Initial ULPG:Hickey.Niamh via AMBER
- Re: [AMBER] Restart less efficient than Initial Adrian Roitberg via AMBER
- [AMBER] PatchingError: using update_pmemd saverio lemme via AMBER
Tuesday, 21 April 2026
- Re: [AMBER] PatchingError: using update_pmemd David A Case via AMBER
Wednesday, 22 April 2026
- [AMBER] Questions Regarding Structure Preparation and Protonation Errors for MD Simulation ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
Thursday, 23 April 2026
- [AMBER] Compilation Issues Beierlein, Frank via AMBER
- Re: [AMBER] Compilation Issues Matt Thompson via AMBER
Friday, 24 April 2026
- [AMBER] Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
- Re: [AMBER] Need help in proceeding with md sim Adrian Roitberg via AMBER
- Re: [AMBER] Compilation Issues anu chandra via AMBER
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim Christina Bergonzo via AMBER
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim David A Case via AMBER
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim Thomas Cheatham via AMBER
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim Pedro Guillem via AMBER
Sunday, 26 April 2026
- Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
Monday, 27 April 2026
- [AMBER] How to check if the structure potential energies converged to better state ? ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
Tuesday, 28 April 2026
- Re: [AMBER] Compilation Issues Frank Beierlein via AMBER
Wednesday, 29 April 2026
- [AMBER] Question about QM/MM parallelization in sander.MPI 张玮豪 via AMBER
- Re: [AMBER] Question about QM/MM parallelization in sander.MPI Adrian Roitberg via AMBER
Thursday, 30 April 2026
- Re: [AMBER] Miniforge fails during install + Fix Leung, Jeremy via AMBER

Last message date: Thu Apr 30 2026 - 12:30:02 PDT
Archived on: Mon May 11 2026 - 05:56:20 PDT