Amber Archive Apr 2026 by messages with attachments

57 messages: Starting Wed Apr 01 2026 - 03:00:02 PDT, Ending Thu Apr 30 2026 - 12:30:02 PDT
This period: Most recent messages
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[AMBER] Help needed with MCPB.py for Ru complex ABDELATIF MESSAOUDI via AMBER (Fri Apr 03 2026 - 08:26:45 PDT)
1. Ru_7P2M_m.pdb (204639 bytes)
[AMBER] TI simulation instability with truncated octahedron box Kalandadze, Nino via AMBER (Mon Apr 06 2026 - 11:29:16 PDT)
1. image.png (45147 bytes)
2. image.png (39107 bytes)
3. image.png (61065 bytes)
[AMBER] Questions Regarding Structure Preparation and Protonation Errors for MD Simulation ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Wed Apr 22 2026 - 04:50:09 PDT)
1. d1f3-4691-8fd5-14b7f77ded78.jpg (15899 bytes)
2. Pasted_text.txt (157316 bytes)
[AMBER] Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Fri Apr 24 2026 - 08:05:39 PDT)
1. d1f3-4691-8fd5-14b7f77ded78.jpg (15899 bytes)
2. amber.txt (38492 bytes)
Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Fri Apr 24 2026 - 09:29:32 PDT)
1. d1f3-4691-8fd5-14b7f77ded78.jpg (15899 bytes)
Re: [AMBER] [EXTERN] Re: Need help in proceeding with md sim ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Sun Apr 26 2026 - 10:24:38 PDT)
1. d1f3-4691-8fd5-14b7f77ded78.jpg (15899 bytes)
[AMBER] How to check if the structure potential energies converged to better state ? ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Mon Apr 27 2026 - 08:36:38 PDT)
1. d1f3-4691-8fd5-14b7f77ded78.jpg (15899 bytes)
2. python_script.txt (2903 bytes)
3. simulation.log (4332 bytes)