Amber Archive Oct 2024 by thread
- [AMBER] plumed patch with amber24 Dulal Mondal via AMBER (Tue Oct 01 2024 - 05:50:44 PDT)
- [AMBER] cpinutil.py error: AmberWarning: Molecule atoms are not contiguous! Abdelrahman, Noureen via AMBER (Tue Oct 01 2024 - 09:24:17 PDT)
- [AMBER] Doing alignment on a specific region and run RMSF on ther reagion with CPPTRAJ Maghsoud, Yazdan via AMBER (Tue Oct 01 2024 - 12:56:56 PDT)
- [AMBER] Paramfit X ForceBalance - Was: Forcefield Builder analogs in Amber Jones de Andrade via AMBER (Tue Oct 01 2024 - 15:29:22 PDT)
- [AMBER] issue with packmol-memgen from amber-tools 2024 Enrico Martinez via AMBER (Wed Oct 02 2024 - 03:05:38 PDT)
- [AMBER] Length of translation vector from "rmsd" via cpptraj? Dr. Anselm Horn via AMBER (Wed Oct 02 2024 - 04:12:07 PDT)
- [AMBER] Question about Steered QM/MM/MD Ramdhan,Peter A via AMBER (Wed Oct 02 2024 - 06:04:35 PDT)
- [AMBER] Send pmemd output to stdout? Gard Nelson via AMBER (Thu Oct 03 2024 - 12:39:50 PDT)
- [AMBER] Question about QM with Gaussian using GPU Ramdhan,Peter A via AMBER (Fri Oct 04 2024 - 05:26:02 PDT)
- [AMBER] QM/MM simulation with SHAKE using Sander QUICK module Dutta, Ankita via AMBER (Fri Oct 04 2024 - 09:13:05 PDT)
- [AMBER] Inquiry on problems with CDH2 Zinc Finger Force Field Parameters 戚苗苗 via AMBER (Sat Oct 05 2024 - 18:59:14 PDT)
- [AMBER] Installation: Amber24 with MVAPICH2-GDR Nitin Kulhar via AMBER (Mon Oct 07 2024 - 06:25:30 PDT)
- [AMBER] Saving trajectory during minimization Alexander Hung Lee via AMBER (Mon Oct 07 2024 - 11:58:07 PDT)
- Re: [AMBER] [Sender Not Verified] Saving trajectory during minimization Alexander Hung Lee via AMBER (Tue Oct 08 2024 - 06:05:50 PDT)
- [AMBER] BZIP2 Error when building Amber24 Robert Palmere via AMBER (Tue Oct 08 2024 - 08:50:35 PDT)
- [AMBER] Error when starting PPI GaMD simulation Nikolay Kuzmich via AMBER (Wed Oct 09 2024 - 08:47:36 PDT)
- [AMBER] System Administrator Position, NIH/NHLBI Daniel Roe via AMBER (Thu Oct 10 2024 - 06:10:54 PDT)
- [AMBER] Enforcing Chirality in DNA Simulations Maciej Spiegel via AMBER (Thu Oct 10 2024 - 12:46:39 PDT)
- [AMBER] segmentation faults and randomly stopping simulations Ryan Woltz via AMBER (Thu Oct 10 2024 - 15:16:26 PDT)
- [AMBER] AMBER-ORCA Interface Ramdhan,Peter A via AMBER (Fri Oct 11 2024 - 06:08:47 PDT)
- [AMBER] Problems building Amber Martin Cuma via AMBER (Fri Oct 11 2024 - 08:51:22 PDT)
- [AMBER] CPPTRAJ is unable to handle the specified arguments Maciej Spiegel via AMBER (Sat Oct 12 2024 - 01:40:25 PDT)
- [AMBER] What forcefield for DNA-RNA duplex Maciej Spiegel via AMBER (Tue Oct 15 2024 - 11:41:00 PDT)
- [AMBER] Using Steered MD in NPT vs NVT vs NVE Ramdhan,Peter A via AMBER (Wed Oct 16 2024 - 10:49:21 PDT)
- [AMBER] AMBER CUDA version support Martin Cuma via AMBER (Wed Oct 16 2024 - 10:45:53 PDT)
- [AMBER] multiple solvent system Enrico Martinez via AMBER (Thu Oct 17 2024 - 01:40:02 PDT)
- [AMBER] Installing Amber24 and AmberTools24 Andriy Kovalenko via AMBER (Fri Oct 18 2024 - 07:41:58 PDT)
- [AMBER] MBAR options causing error in reading namelist cntrl Charlie Holdship via AMBER (Fri Oct 18 2024 - 08:21:26 PDT)
- [AMBER] Atommap doesn't change atom names Maciej Spiegel via AMBER (Sun Oct 20 2024 - 03:00:23 PDT)
- [AMBER] Seeking Automated Torsional Re-parameterization Tools for GAFF/GAFF2 Marawan Hussien via AMBER (Sun Oct 20 2024 - 10:13:11 PDT)
- [AMBER] Assistance Required with MCPB.py and Non-Standard Residue Handling 郑逸非 via AMBER (Mon Oct 21 2024 - 00:04:49 PDT)
- [AMBER] AMBER24 compilation - MPI Fortran Yasser Almeida via AMBER (Mon Oct 21 2024 - 07:35:24 PDT)
- [AMBER] Question about MCPB.py tutorial with GAMESS-US Silva Carvalho, Felipe via AMBER (Tue Oct 22 2024 - 20:45:04 PDT)
- [AMBER] Question about protein-ligand system: how to add copy of ligands to the solvent ? Enrico Martinez via AMBER (Fri Oct 25 2024 - 01:58:14 PDT)
- [AMBER] How to Derive missing parameters for modified nucleosides (OL15/OL21) Maciej Spiegel via AMBER (Fri Oct 25 2024 - 09:28:36 PDT)
- Re: [AMBER] Question about the use of MCPB.py(Handling of proteins with non-standard residues in the chain) Li, Zhen via AMBER (Sat Oct 26 2024 - 12:05:13 PDT)
- [AMBER] patch plumed in amber24 Dulal Mondal via AMBER (Mon Oct 28 2024 - 07:04:32 PDT)
- Last message date: Thu Oct 31 2024 - 08:30:02 PDT
- Archived on: Sun Dec 22 2024 - 05:56:18 PST
