Hello,
I am following this tutorial: https://amberhub.chpc.utah.edu/create-new-nucleotide-for-amber/ <https://amberhub.chpc.utah.edu/create-new-nucleotide-for-amber/> , but when I reach the step:
> atommap o37-with-charges.mol2 o37-for-charges.pdb mapout atommap.dat changenames
or
> strip .C17,1H17,2H17,3H17 charge -1.0
I encounter errors:
< Error: [atommap] Not all arguments handled: [ changenames ]
and
< Error: [strip] Not all arguments handled: [ charge -1.0 ]
respectively.
I thought the issue was due to using an old version of AmberTools, but I updated to the latest version (CPPTRAJ v6.18.1), and the problem still persists.
Any thoughts?
–
Maciej Spiegel, MPharm PhD
assistant professor
.GitHub <
https://farmaceut.github.io/>
Department of Organic Chemistry and Pharmaceutical Technology,
Faculty of Pharmacy, Wroclaw Medical University
Borowska 211A, 50-556 Wroclaw, Poland
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Received on Sat Oct 12 2024 - 02:00:02 PDT
