Hi,
What version of cpptraj are you using? The ‘changenames’ keyword was
introduced in 6.22.2.
-Dan
On Sat, Oct 12, 2024 at 4:40 AM Maciej Spiegel via AMBER <amber.ambermd.org>
wrote:
> Hello,
>
> I am following this tutorial:
> https://amberhub.chpc.utah.edu/create-new-nucleotide-for-amber/ <
> https://amberhub.chpc.utah.edu/create-new-nucleotide-for-amber/> , but
> when I reach the step:
>
> > atommap o37-with-charges.mol2 o37-for-charges.pdb mapout atommap.dat
> changenames
> or
> > strip .C17,1H17,2H17,3H17 charge -1.0
>
> I encounter errors:
>
> < Error: [atommap] Not all arguments handled: [ changenames ]
> and
> < Error: [strip] Not all arguments handled: [ charge -1.0 ]
> respectively.
>
> I thought the issue was due to using an old version of AmberTools, but I
> updated to the latest version (CPPTRAJ v6.18.1), and the problem still
> persists.
> Any thoughts?
> –
> Maciej Spiegel, MPharm PhD
> assistant professor
> .GitHub <https://farmaceut.github.io/>
>
> Department of Organic Chemistry and Pharmaceutical Technology,
> Faculty of Pharmacy, Wroclaw Medical University
> Borowska 211A, 50-556 Wroclaw, Poland
>
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Received on Sat Oct 12 2024 - 06:30:02 PDT
